Array 1 916-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNL01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001374 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 915 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 854 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 793 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 732 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 671 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 610 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 549 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT G [532] 487 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 426 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 365 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 304 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 243 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 182 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 121 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GATGGAACAGGCCCAGGCTGCGCAGCAGCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 109004-107814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNL01000018.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001374 contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109003 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 108942 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 108881 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 108820 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 108759 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 108698 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108637 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 108576 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 108515 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 108454 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 108393 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 108332 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108271 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 108210 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108149 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108088 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108027 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 107966 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 107904 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 107843 29 96.6 0 ............T................ | A [107816] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGGCGATT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNL01000041.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001374 contig00041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 67 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 128 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 189 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 250 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 311 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 372 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17023-18271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNL01000041.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001374 contig00041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17023 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17084 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17145 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17206 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 17267 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 17328 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 17389 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 17450 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 17511 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 17572 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 17633 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 17694 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 17755 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 17816 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 17877 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 17938 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 17999 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 18060 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 18121 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 18182 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 18243 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : ACTTGCTTCATTGACATGCCTGCCACTGCTCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //