Array 1 9293-11972 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRWW01000027.1 Bacillus mycoides strain EC18 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9293 32 90.6 35 ....T.....T.G................... TCTTTTTTGCCAAGGTGTTCCCTGCGGTGGAAACA 9360 32 90.6 33 .......T..T.G................... ATCGGACGACCACTAAACAGGTGATTCCTTACC 9425 32 81.2 35 ..........T.A.T....T.G.......G.. ACCTCGACCCCGACAACAGATGAGAACAAAAAAAT 9492 32 90.6 35 ..........T.A.T................. CCTAAACCTCGCTTAGGAAACACTTTGCTACATAC 9559 32 90.6 35 ............A.....A..G.......... GCAAGTTCAAATGCATCCAAATCTGCATAAGTTAA 9626 32 90.6 34 ..........T.A.T................. ACTCCTCAACTTATTATTAAATCGGTTATATGAG 9692 32 90.6 34 ..........T.A......T............ TTCTGTTAAATAGGGTGCTTGAATGGTTTCTAAA 9758 32 87.5 35 ..........T.G....G...G.......... ACCTCGACCCCGACAACAGATGAGAACAAAAAAAT 9825 32 90.6 33 ........C...G.T................. GTAGTTGATATATATAACGCGATAGAAGCAGAG 9890 32 90.6 34 ..........T.A........G.......... ACAATAAAAGAGGGAAGTAACGGTGGACATAACG 9956 32 87.5 33 ...C......T.A.T................. CCGCATGTATGTATCACACCAAACGGCACACCG 10021 32 90.6 35 ...A......T.A................... CATTGTAGTTGCACTCTGAGTTGTCGAGCATCTGA 10088 32 93.8 33 .........TT..................... ACCAGGAATAGTTGTAGAAATTAGTAAGCGAGA 10153 32 84.4 34 .....T....T.G....C...G.......... TTACCTAAGCATTATTACCTATGTTTTACCTGTC 10219 32 87.5 33 ........C.T..........G..G....... GGATTGAAATTGCTCGGCATCAATGCCGCGCTA 10284 32 87.5 34 ..........T.A.T......G.......... CACTTACAACCGATGGGAAAGGATATGCGGTTGT 10350 32 81.2 35 .........ATAAG.......G.......... ACAGATGAACACATAGAGCAACTATTCAAAGCAGG 10417 32 87.5 33 ..........T.G.T......G.......... CATGATAGTAGAACCATGTAAGTTGATTGCACC 10482 32 84.4 35 .......T..TCG......T............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10549 32 100.0 35 ................................ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10616 32 100.0 35 ................................ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10683 32 100.0 35 ................................ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10750 32 100.0 35 ................................ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10817 32 100.0 35 ................................ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 10884 32 100.0 34 ................................ CTCCTTATTTACTTAGAAGAAACGACCGTGTTAT 10950 32 90.6 35 ..........T.A.T................. AATCTCAATCGCTTGTGATACTTCGGGAATACGGA 11017 32 81.2 33 A........ATAAG.................. ATGATTAAGAACGTACCGATCGCTCGTGCTCAG 11082 32 87.5 34 ..........T.G.T......G.......... GATACATTAGAAACCATACAGGCTCCGTTTTTAT 11148 32 87.5 35 ..........T.G....G...G.......... AATAAGTAACCCTGCATTCACTTCACTATTAGCAT 11215 32 90.6 33 ..........T.A.T................. CACTTTCCTTTCTCGTATACGTGATACCAAAAA 11280 32 96.9 35 .....................G.......... ACCAGGAATAGTTGTAGTAATTAGTAAGCGGGAAC 11347 32 81.2 35 .......T..TCG.....TT............ CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 11414 32 90.6 33 ..........T.G....G.............. TTTGATAACAACATATGTAAAACATAAGTAAAT 11479 32 81.2 34 ....T.....T.G.G..G...G.......... ACTCCTCAACTTATTATTAAATCGGTTATATGAG 11545 32 93.8 34 ..........T.G................... ACGTAAGTTGACAAGCCCCGCGAGTTGCGTTGTT 11611 32 87.5 34 ........C.T.G........G.......... ACTATTAGCGTCTGGATCAGCGACTGGTGGAAAT 11677 32 87.5 35 ..........T.A.T......G.......... CTAGAATTGCTACAGCAACTCACGTAATCTTTAAA 11744 32 90.6 32 ..........T.G........G.......... CTGCAAGACTTAGAGAGATAAGAAAAAAGATT 11808 32 90.6 34 ..........T.A.T................. AGTTTTAAGCCTTGTGTATCCGCCACGCTCTCCA 11874 32 87.5 35 ..........T.A....G...G.......... TTCCATATGGCTATATTGACAATCTTCGCGCTCTT 11941 31 90.6 0 ........-........G.T............ | A [11954] ========== ====== ====== ====== ================================ =================================== ================== 41 32 90.1 34 GTCGCACCTCCTTTAGGTGCGTGGATTGAAAT # Left flank : ATCGGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGCAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGGAGATGCGGAAAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCGTCAGCAGCACGTCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGTCAGTACTCTTCTGCAAAAGTACACCGTTTACTGGACATTAAGCGGAATATTGACGAACCAAAAACAATTGATGACTATACCATCTTAGTACATGAATTAGATGGTTTAAAAGTTGCGATTATTGATGGACTATAGTGAAGAAAACGTTAGAATGATTGAAGGAAAGCGTATTTATTAAAAAGCTAATCAACCATTTATTAAAGAAAA # Right flank : TTCAACTTTCCTGCTATAACTCTTTTCCATGCGAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTTGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATATTTTTGAACAGAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGTGTCGCACCTCTTGTAGGTGCGGGGATTGAAATCTATTTAAATCATTAGTTTTACAAATTATTGGAAGTCGCACCTCTTATAGGTGCGTGAATTGAAATAAATAGACTTCACCAATTCCTTAATAAAACAAGCTCTTGTTCTACAATATTACTTAACTACTTTAGCTTCCTAATTGAAACGCCTAGTAATTGCTATAAAACATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTATT # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCCTTTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [48-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12802-13721 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRWW01000027.1 Bacillus mycoides strain EC18 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================================================================================= ================== 12802 32 100.0 33 ................................ ATCCAGACTTCATCATCTTCTACCAACATTACC 12867 32 93.8 33 ............G........G.......... CGCATTCGTGCAGGTAAAGTAGCACGTGCTTAT 12932 32 90.6 35 ............G.G...A............. GCCTTTTGTGTTCCGGTGGTTATAACCCTCTAAGT 12999 32 90.6 35 ............A.T......G.......... AGCTTTCTGAATTGTTGGAAATGAACAAGGTGTAT 13066 32 93.8 34 ...........CA................... CACATTAAGAATTTAGGAACGAATATTGTAAAGC 13132 32 100.0 34 ................................ GTTAAGACAAGCGGATTTAGCTCATGAACTAAAT 13198 32 96.9 35 ............G................... CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTC 13265 32 87.5 34 ............A.T......GA......... TTTGAAGACTTGACACAAGCCAAAGTCGCCTTAC 13331 32 90.6 35 ........C...G....G.............. GCGAAAAGGAATTGATTCACACCACCCGCAATTAA 13398 32 93.8 193 ............G........G.......... TTCCATATGGCTATATTGACGATATTCGCGCTCTTGTCGCACACATGAAATTCCTAGTACATTCGCACCTGAATTTTCATAATTTGTGATTAAAATTTATGATTTTCTATACAAATTTCTTTATTAAATAAACAGCTTGCATATTTTTGAACAGAATTAACGCATTTGTGTATGATTTTGAACACAAATCGGG 13623 32 93.8 35 ..T.........A................... ACTACTGGAATTGCCATTGCATCTTCTTTGCTCCA 13690 32 90.6 0 ...........C.........C.........C | ========== ====== ====== ====== ================================ ================================================================================================================================================================================================= ================== 12 32 93.5 49 GTCGCACCTCTTTTAGGTGCGTGGATTGAAAT # Left flank : GCACCTCTTATAGGTGCGTGAATTGAAATAAATAGACTTCACCAATTCCTTAATAAAACAAGCTCTTGTTCTACAATATTACTTAACTACTTTAGCTTCCTAATTGAAACGCCTAGTAATTGCTATAAAACATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTATTTGAATGTATTGTAGATGCGGCTCAATTTGCTACTTTAAAAATGGAATTACTTAAAATTATTGATGAAGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTAGTACATTCGCACCTGATTTTTCATAATTTATGATTTTCTATACAAATTTCCTTATCCAATAAAAAAATCGCATACTTTTGAACAGAATTAACGTATTTGTGTATGATTTTGAACACAAATCGGT # Right flank : CTTTTTTGAGATACTTACTGCTTGATATAAAACATTTCATATTTCGACTCTTATCCTTCTCCTGCTCATCTTTCAAACTTTCTCGACGTTTATTCAAATAAAAATAAAAAAGCTGAATCCCTTCTCACAGAAGAGGTTTCAGCTTTTAATTTTTTTATCATATCCTTTGCAACAAGATGCAATTATATTTCAGTGTATCCGCATCTTGTAGCTATTATTATGTATGCTATATTCCACAAAATAATTACAAAAAATCTCTTATTCTTTTTATCTATTTTTATAGTATGCTTCTTTTTTGAATCATATGCTTCTTTTTTGAATCATCTATGTACGTATAAGTTTAGAAAATTGTGTCCAGACTTACAGATACATAGAAGAAAAAGGAGCGGAGAAAAAATGAAAGGTAATAAACAAAAACGTACAAAATTAGGAAGATGGTTAGATCAAAATGGAATTGAACAAAAGGAATTAGAAACAGCAGCGAAGGTTAGCCGTAGCAC # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:-1.44, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTTTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //