Array 1 1497-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQX01000435.1 Streptomyces ossamyceticus strain NRRL B-3822 B-3822_contig_435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1496 29 100.0 32 ............................. CCGGATCTTGTACTCGTACGTGGGTCGCGCCA 1435 29 100.0 32 ............................. GCCACTGCCGCGCAGGTCCAGGCCGCGCTGGA 1374 29 100.0 32 ............................. GGCGCGCAGTACGCCGAGATCGTTAGGGCCAA 1313 28 96.6 32 ........-.................... GACTGGGGTGGCTCGCTGCCAACCGATCCCGA 1253 29 100.0 32 ............................. AGGGCGGTGATTCCGCTGGACTGGATCCACGG 1192 29 96.6 32 .........A................... CTCCGTGGCCCTTGCCGGAGCGAAGCCCCCAG 1131 27 89.7 32 ...........--.T.............. TTCCGTACGGCGAGCTGCGACAGAACGGTGAT 1072 29 96.6 32 .....T....................... GCGTCGATCCAGGCACGTGCCTCGGCATGCGG 1011 29 96.6 32 ..............G.............. GCGGTGGACGCCGGTACCGGCGACAACACCGT 950 29 93.1 21 .....T..............A........ CACAGCGGGCACGCAGGACCC Deletion [901] 900 29 100.0 30 ............................. GTCGTCAACGGGACGTTGGCCGGTCAATAT 841 29 96.6 32 ..............A.............. CTGGAGCCGAACCGGTCGGGGCCGCCGTACAA 780 29 100.0 32 ............................. GCTGGTTTGAGGGCGCGGACCTCGCGCGCGGC C [765] 718 29 96.6 33 ..............T.............. CCACTCCATCAGCCGCTCGGCCAGCACCCGCTG 656 29 93.1 32 .G...A....................... GACGACGGACCGCCCCGCAGCAACCGGGGCGG 595 29 96.6 32 .............T............... CAGGGCTACGACGGGGCCGTGGTCGCCGCGGC 534 29 100.0 32 ............................. ATGAGGATTCCGCCCGCCGTAGCGAGTGCTAC 473 29 96.6 32 ..............T.............. GGGTCGGGGAAGTCGGTGTCGCCGACCGAGCG 412 29 96.6 32 ........................A.... TGGACTTTGATGTCCGGTGTCGGGTCGGCGAA 351 28 89.7 32 .......T......A.....-........ GCCGAGAACGAGATCCGCCTGGTCGGCCAGTG 291 29 89.7 32 C.............AA............. TCGCTGGTGTCGCGGCCGCCCATGCCGTACTC 230 29 89.7 32 ...........T....T...........A CTCCCCAGGCCAGGCGCGCCCCCAGGTGGTCC 169 29 86.2 0 ..........T...T...........GT. | C [143] ========== ====== ====== ====== ============================= ================================= ================== 23 29 95.7 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCCTGGCCGAGGCGCCGCAGACCCTCACCGTCGACCGCACTTTCCGCATCGGTGACCGTGTCGACTTCCGTACGGTCGTCAATCCGGTCCGCAGCCTTCCGCCCGCGCCCGGCTCACCGCCGAAGACCCGCGGCGTCCGCGTCCCCCACACCCGCCCTGAGCACGTGCGGACGTGGTTCTCGCACCGCCTCCAACCATCCGGAGAACCTGCGGTTGCCCCCAACGGTGTCACCCGCATCGGCGCTGACGCGGACACCGAACGGCTCGCTCTGCGCATGCTCCCGCGAATCTCCAGTCCGGCACCGCACAAGGGCCTGCGCATCGCTCGTGCCGAGATCAAAGGCACCCTCACCGTGACCGACCCGAAGGCGCTCGTCACCGCCCTCACCCAGGGCATCGGCCACGCGCGCGCCTACAGTTGCGGACTGATCCTCGTACGCTGAACAAGGACGCACCGTTCTTGGTCCCACGTCCTCCAGCCCTTCGCCGAACGCTGCGAT # Right flank : CTTGGCTGTCGGCAGTGGTGCCGTAGGGGCCGCGGGGCCGGCGGCTGACCGCGCCGGCCCGCTCACCGGCTAACGGTGCACGTCACTGCTGGGCGTCCTCGGTCACCGCCCACTGGACCCCGAGTTCGGCCAGTGCCTGG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2050-3409 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQX01000307.1 Streptomyces ossamyceticus strain NRRL B-3822 B-3822_contig_307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2050 29 100.0 32 ............................. TCCGGCTCCCCGAGGACGAACTGGGAGTGGCG A [2071] 2112 28 89.7 32 ........G.....T..-........... GAGATCATCATCAAGTCGAAGACCTACCGCAG 2172 29 96.6 32 ..............T.............. CGGTTCGACCTCGAGCAGAAACGCGGCTCCTC 2233 29 89.7 32 ........................AA..G GCCTACGGTCCGGGCCAGTCTGTGGCTGCGCC 2294 29 96.6 32 .....T....................... ACGACGTCGTTCCAAACGGCCGACAGCCACTG 2355 29 93.1 32 .............T...........C... CGCACCATCGGCGACGTCATCCTGTACGTGAA 2416 29 89.7 32 ...T..........T...A.......... TATCTGGAGACGTGGGCGCAGCCGGACGCCGC T,GT [2428,2430] 2480 28 82.8 30 .....A..T..-A.G.............. TGGCTGGGGTCTGCCCACGGCACCGACGCT G [2497] 2539 29 93.1 32 C............A............... GAAGCGACCGAGGCGCCCGACGCGCAGGCGGT 2600 29 96.6 32 ...T......................... TCGCCCAGGGCAGCGGCGACCACGGCCCCGTC 2661 29 100.0 29 ............................. TCGACTCCTCACCTGGGGCCTGCCCGTGG 2719 29 86.2 23 ....CT...................CG.. AAGGCCTTCGGGGCACCCCAGTT Deletion [2771] 2771 29 93.1 32 ..........T...T.............. GCCCTCAAGACGGCGGGCGGCGGCACCGGGCA 2832 29 93.1 32 .............G...A........... TCCAGAAACGCGGCGAGGCCCGGTGCGCGAAC 2893 29 93.1 32 .......................A..T.. TGGACCGCCACGACACGATGCCGCTGACGGCC 2954 29 100.0 32 ............................. CTCGGCGAACTCCTCGTCGCAGCCAACCCCCT 3015 29 93.1 32 ..........T.......A.......... GGCTTCGACTGCTCGGGCCTGGTCAACTGGGC 3076 29 89.7 32 ........T..A..T.............. TCCTGCGCGGTCGTGGTGAACTGGAACGTGTC 3137 29 100.0 32 ............................. GTCGTCAACGGGACATTGGTGCCGGTCAATAT 3198 29 96.6 32 ..............T.............. ACCGCGATGTCTCGGCTACGTTCCTGGCTCAG 3259 29 89.7 32 .C.........C..T.............. GAGCCCGTGCACATGGTGGGACGGGTCATCCA 3320 29 96.6 32 ............G................ AACCTTCAGGACCAGCTGGAGGACATCCAGCG 3381 29 82.8 0 ........T..A.TT......G....... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 93.1 31 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGGACGCGGACCTGGTCCTCACCTCGCTGGAGTATGCCCTGGCCAGCCGCGAAGTCGCCCCCGGCGAGCTCGTTCACCACGCCGACCGCGGCTGTCAGTACACGTCCGTGAAGCTCACAACCGCCGCTACGTCGGCTGGTACCGGCACATCACCCTGGCCATGCTCGCCCACGCCTTCCTCGCGGCGATGAGCGCGCGAGCAGCCGAAAAGGGGGATGCACCGGTGAGGATGCCGTGGTCATCGAGCTCACCGTGGCGGAAGTGCGGCGACTCCTGGCAGCTCACGCACCCCGAGACCCTCACACCCTCACCCACGCGTTGAGCTGGTCGCGCTGGCGCCGACGACGCCAAGCGGTGGCCCGCCACTGCCACTACCGCCGTCGTGGGCACTCCTTCGAGGGGCGTGCGGGCAGAAGCCGTCCGTGACAGCATCCCGCCCGCTACACTCCCACCGTTCGACGTTTCCCCAGGTCAAGCCACGAAGTACTGCTGGAGTACTA # Right flank : CGTACGAGAGCGGCCGGTGGACTGCGCCAGGTCGTGCTTAAGCTTGCCTCGCCCATGGGGGAGGCCTCGACTGTTACTTGACGTAGCGTGTGACTACGCCGAAGAAGAAGGTCAGGGTGGCAGCAGCTCCTGCGACCGGGTAGAGGAGCACTGCAGCCACGAAAGAGAAAATGAGAAAATCACGCTCAGACATCTGTCCTCCAAATAAATTTTTCCAAATGCGACGCTCCTTGCGTCGAGGTGTTGAACTGCTTTAATCTTACCGTCAGCTGACGGTGCATCATTTTCCTGGGGTGGCTCCCTGCAGCCGCCGACTATTTCTTCTTTGGGCACGTAAAAGCCTAGGCCCCTCAAAGGGTTGTGTGACGTTGCTCACGGCAGTGTGGCGCGTAATTCTCTACCCCCAGAACAGCCTCACAGCGCCGCACGCCCAGAACACTCAGTGCAGCGTCTTCCCATGGCGACTGATAGGGGACTGACGGTCAGCCCTCCACGGCACT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4470-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIQX01000307.1 Streptomyces ossamyceticus strain NRRL B-3822 B-3822_contig_307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 4470 29 96.6 32 .................A........... CGCACCACCGGCGACGTCATCATGTACGTGGA 4531 29 93.1 32 ...T..........T.............. GGCACGAACAACCTCCTCACCGGCGACGCCCG T,GT [4543,4545] 4595 29 100.0 32 ............................. ACCAGTCCAGCGATGACGTTGCCGGCGACGTC 4656 29 100.0 32 ............................. TCCTGCCAGTCCTTCTCGCCCAGTGACGCTTT 4717 29 100.0 32 ............................. GGACCGGGCCACATCGTCGGGGTCTTGAGCAT 4778 29 96.6 32 .................A........... GCGGTCATGGCCCTCAACCCCTTCGTCTTGGT 4839 29 100.0 32 ............................. CGCGCATGCGACCGGGCCGTGATCGGCATCGG 4900 29 96.6 32 .................A........... ATCGAGTGCATGAGCGCCACAGACAGGCGTTT 4961 29 96.6 32 .............T............... GCGGAGGGGGTGAGGATGACTCGCCCGGTGTC 5022 29 96.6 32 ........................C.... TACATGGAGCTCGTCGTCGACGCGCTGGTCGG 5083 29 93.1 32 .............T.C............. GCACGTTTGGCCCGCGCGTAGCTCTGGAGCGG 5144 29 100.0 32 ............................. ATGGGGGTACGCGCATGTCCGAGCCACTCTCC 5205 29 96.6 32 ..........................G.. CGGCTCCCCGACCGGTACGACACGGCCGGTGT 5267 29 93.1 87 ..................A........T. GCCTCGACCTTGGTGCTGGCGTTGTCCCGTGGTGCTCCCCGCACGGGGATGGTCCCACCGCGATGTCTCGGCTACGTTCCTGGCTCA 5383 29 93.1 32 ...........T..T.............. CCTCACACCACGGTTTCCGCGCGTTCCGGTGA 5444 29 96.6 32 ..............T.............. AAGCCGAACCGGTTCTTCACCCGGCAAGAGCT 5505 29 100.0 32 ............................. TTGCAGCTCACACCGCAGAACCTGCGCAACAT G [5522] 5567 29 96.6 32 ..........T.................. CCGCGAGGCTGTGAAACCGTGGCAGCGCTCCG 5628 29 93.1 32 ........T...............A.... CTGTTCACGCTGACCGGCGGCGCGACCGCAGT 5689 29 96.6 32 ..............T.............. GCCCACACGGTGGGGGGAATGAGTGCGGCCAG 5750 29 96.6 32 ...T......................... GAGGAACAACCCTCGCCCGTTGGCGTCGCCTT 5811 29 100.0 32 ............................. CAGAGGCGGCCGACGTTGGTGATCTCGTAGGT 5872 29 86.2 32 .G........T...T...........T.. TTCACGAACGCGTCCACGTCACCGAGAACGAA 5933 29 100.0 32 ............................. AGGCTCACGGCCCACCGCCCTTACTGCGCGAG 5994 29 96.6 32 ............T................ CGGGCCTTCGACTGAGCCCGTTGGGAGATCGA 6055 28 75.9 0 ..A...........G..C...GC..-..A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 26 29 95.8 34 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCTGGGTCTCTGTGCACGGTCACCCCGCGCTCCATTCCTACTGCTCACCCGCGAACACCCCCAATTGGCGCGCGACTTCTACAGGTGAAGTTAGTGGGGGTTATAGAGTGAATTCGGAACGCAACCTCATGAAATTCCCTTGAGGGTATGCGGTGATCTCTCTTAAACTGATCCCCAAAACAAGCTGTCGCCAGTTCTCCGAAAAGTGACCCTCAGTCAGTTCTCGAATGTTGACCCCTCTGGTAATCCTGCGCGTGGCTGTGTCACTCTCCGGGGGAGAGACCTTCTCCGACGACGTCGTAGCCGCCGCGATGATCGACCGCCTGGTCCACCCCGCCGAGGTCCTCACCCTCACCGGCGACTCCTACCGCACCCGCCAACGACGCGAACTCCTCGCCAAGGAGAAACGCGCGGGCCGCGACTGATCAACCCACTGGGGGCCAATTTTCTCGAACTTCCAGGGGGCAAAATTCAGGAACCGTTGACATGGTCGGCCAGTG # Right flank : AGTCGTGGTGCTGTAGGAGCCGCGGGGCCGGTGTGGCTAGGCCCGCTCACCCGCTGCGGTGGGCGGGCCACGTCACTGCTGGGCTTCCTCGGTCACCGCCCACTGGACCCCGAGTTCGGCCAGTGCCTGGTGTCCAGGAGCGGTTTTTCTGATCAGTGGGTGGTGGGCTGGCCTGCTCTGATCACTTTGGTGCGCTCCTTCGGTCGAGGGGTACGAGCGCGGCAGGGGTGGGCAAGGGGTGTGGTGCCGGACCTCGGGTGGGCTTGTGATCTGCGGGTTTGCCAGATGGCGCGTTGACTTTTCAGGTCGCGTCATCTGCGTTGGCCGGTGCTCATGTTCGTTGATCGCTGATATGGGGGCTGTCCTCTACGGGGCTGGGAGGCAGCGTGGCAGGCGGGGAACCCGGGGGCACCGACGAAACGGTCGCCGACAGTCGTCCGTCGGCGAGTTGGCTGACGATCTGGTGAGGTCGCCGGCGATGAGCGCGTCATCCGGGCGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //