Array 1 10100-8670 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZA01000002.1 Clostridium saccharobutylicum strain NCP 165 CLSAB_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 10099 28 100.0 36 ............................ TTGATGACGCTTGGTCTTCTGTCCAAAATAAAACCA 10035 28 100.0 37 ............................ CTATAAAGGGGGAAACTAAATGAAAAATATAACACGA 9970 28 100.0 36 ............................ AAATAGGTTGGTCGATAAATGAATCAACTGTAAGCA 9906 28 100.0 36 ............................ GTGGAAAGAAGTATACTGAATTGCTTCATAAATCAT 9842 28 100.0 35 ............................ TTCAACGATAATATTTTTTTAGCTAATTCAGTTTC 9779 28 100.0 36 ............................ TTATTTCCATACACTTGATATGCTGTAGGTTCATCA 9715 28 100.0 35 ............................ TCGATTTGCATTTGACTATCTGATGTTGCAAATGT 9652 28 100.0 36 ............................ AATGATAACATTAATATGAATTTTATTAATGAAGAA 9588 28 100.0 36 ............................ GAGATAAGAGATTCTGCTTTATTCAATGGATTAAAC 9524 28 100.0 36 ............................ ACTAATTCATCAAGGCTAATATTATACACTTCACAA 9460 28 100.0 35 ............................ TAGCTCTATAGCGTTTTGCATATCATTACTAATTG 9397 28 100.0 36 ............................ AGAACTTGTCCTGGAACATTTGTTGCTTGCAAGTCT 9333 28 100.0 36 ............................ TGCAATAACATTAACTTGATTCCATTTATCCCCCCA 9269 28 100.0 35 ............................ AAGCTTCTATATATTCATCATTTTCACTCTGAAGC 9206 28 100.0 35 ............................ CAATATACACCTTGAGCATTAACACTTCCCGACAA 9143 28 100.0 35 ............................ CATTAAATAAAGCATCATACTTAGCTTTAACTTCA 9080 28 100.0 36 ............................ GTACGTTTTTCCAATGTTGTTGTAAGATTTAATATT 9016 28 96.4 36 .......A.................... GGAGAAGTTATGGATGTAATTGAAAGAGGAAGCACA 8952 28 96.4 36 .......A.................... AATAAAAGAAAAGCTCCAATTGGTAATTCGTTAAAA 8888 28 96.4 36 .......A.................... ACTATTACATCTAGTGCAACAAATATTCTGGCTTCA 8824 28 96.4 36 .......A.................... TTAAAGAAAAGTAAAATATGTAAAGATTATCTTTAT 8760 28 96.4 35 .......A.................... ACTAAAAAGGTTAAAAGTGTTAAAGAGCCTATACG 8697 28 67.9 0 .......A......TATT...A.CG..G | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 97.8 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TAAACATTTGATAAAAGATGAAAAATATAAACCGTTGAAAGCTTGGTGGTAATATGTTTGTAATAGTAACTTACGATGTTAATGAAAAAAGAGTAAACAGAGTTAGGAAAGTATTAAAAAAGTATATAACATGGTGTCAAAATTCAGTTTTTGAAGGAGAAATAACTGAAGGAAAATTAACAAAATGTATGGCAGAAGTTAAAAAATATCTAATAGATTCAGAAGATTCACTATATATTTATAGGATTCCTTATAGTAAAAATATAAAGAAAGATGTTATAGGCGTTGAAAAGAATTTAGATGAATTATTTTTATAATTGCATTAAGCGATTTTTAGTATTAAATCTATCTCAAGGCAGTTGTTAACAACGGTGTAATCAATTTTATTTAATTATTAAAAATCACTACTATAGCTTTACTGCAAAAGTTTATGCTATAATATAAAAAGATATAAGCTAAGATGGCTAATATAAAGGGTTTAAGTTATGTGTTTTTTCGGG # Right flank : CTATTTTTTCCTTCCTTAATAAGGTTCTCCATTGTGCATCTATTACAATAAAACGTTATTACAGATTCTAGACGGATGATCATATTTGTTACAACAAAAGTATAATTTATACACATTTGACCTTCTTTGTTTTCTAATTTCACAACAACTCTGCGATTTTTAGTTAATTTCTTTGCGTTATACATGAATTTGCAATATATGATATTATGTTAATACATGTTCCTTTTTTATAATTATTCCATAATTAATAAATTATTGATAATATTTATACAATATTGCATTTGCTTTTAGTCTTATGGTATATTTAGCAGCATGTTCTTCAGAAGCCTTGTAAAATTCTGGTAGAGAAAAACCGCTATTCCCATGAATGTATAGTCTATATAACTATATTTATTTGAGTATATTTTTAGTAATGGATCAATAAAAGCCACTGTTGTTCTTAATTTATAAACATTCCCAGATCTTAATTATGCTTTTAACAAATCACCTGCTAATCCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 17137-17624 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZA01000111.1 Clostridium saccharobutylicum strain NCP 165 CLSAB_contig000111, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 17137 30 100.0 36 .............................. AGGAAAAACAAATACACTTGTATATGCTTATAATTT 17203 30 100.0 36 .............................. CAACTAGTAGTATATCTAATTCTAATAATTATTTAA 17269 30 100.0 36 .............................. GAATTCAATGTAAGTATTGATGGCAGTTTCACTAGT 17335 30 100.0 36 .............................. ATTTGAAGTGAATGAACTTATGTGTATAAAATTTCT 17401 30 100.0 35 .............................. AGCGTTAAATCTAAAAATAAAAAAGAAAAAGTTTC 17466 30 100.0 34 .............................. TAAATTCGAATGAGTACGAAATGGATGGAAAACA 17530 30 100.0 35 .............................. GAGTTTTAGTTAATACTAAGGCTTTTTTTATTGCC 17595 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 ATTTCAAAACATATAATGTTAATCTTCAAC # Left flank : ATAGGAAAACAAATAACACCTTAGCTTCATCATTATTAACAGCAAATACTTCATTATAATAATGATTAAAGAAAACTATACCTGATGCACGGGAATGATTAGAATTATTTACTTTTATATTTTTATACTTTTCATTTTTCATTTTTTCTTTTTGAAAACCAGGATTACTCTTACCTACATCGTGGAAAAATACAGTATTTAATACAATTTCCTTCCACAAATTAATGCATTTACTTGAGCAGCCTTTTAATAGTCTTTGTTCAAAATTATTAAATACACTATCTAGATTTTTTACATCTACTATCTTATAAAAATATTTTATGCACCGCTCATTATGCTCAGCTAGAGTTTCATATTCTAAAATGTCACTCTTAGTATGAGAATATATATCAGATGGCTCTTTTAATAACGTAGATATATCTATAATTTTTATATTTTCAAAATACATAAATTCTCTTCTTCCTTTTTTATTTTTATTAAATTAGTTGGACTGTATCTAT # Right flank : CCAAAGTAAATAAGTCATTTCTATATATATTAATATCTTTTAATCCAGCCATTCACCTACATTTGCATATTATTTTACCAGCTATTTTATAAAATTAAATACAATAATACTTAAAATAGTAAAAGCTCATAAAATAGATATTTCGCTACAAATTACTTATTAAAATCGCCTGGTAAATTATTTGTATACTTGTTACTTTTTAATAGAAAAATAGATTTTTATCATTAATACTATAGATAATAGATTCTTTATCATTAACCTCTATAGACTTATTAGTACAAATAAATTTTCTAGTATCATATGTATTAAACTTAGGTTCCAAAGCATATGGTAAAAACTCTTGGTATACATATTCTCGCATTTTTTCTAAACCACAGCTTGGTGCTGCTTTAACAGGTCTAAATCCATTAGGTTTGATTAATTTTTTTATATTAACACAATCTTTTAAGAACAAGCTATCCAAAGTAGATATATAGGAAACATCTTGTGTTTCAACACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACATATAATGTTAATCTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1045-1217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZA01000056.1 Clostridium saccharobutylicum strain NCP 165 CLSAB_contig000056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1045 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 1114 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 1183 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GGACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGTCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 41709-41532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZZA01000066.1 Clostridium saccharobutylicum strain NCP 165 CLSAB_contig000066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================== ================== 41708 39 100.0 30 ....................................... AGGATTGGACATTTAGCGATTGTTATAAAT 41639 39 97.4 30 ..G.................................... GAGAATATGCATTTGTTAAGTGCGTTAATT 41570 39 94.9 0 .......C.........................G..... | ========== ====== ====== ====== ======================================= ============================== ================== 3 39 97.4 30 TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Left flank : GAATAATATATTCTGAAAGTTATGTTACAGTGCTATTGGGTAAAAACGAGAATAAGGGGAATGAATGATGATAAAATTGAAATTAACAAAAGTAATGGCAAGTTCATTAATACTAGCTTCAGTATTTGCATTAAATCCAATAGGAGCAAGTGCAGAATGGAAAAAAGATAGTAAGGGGTGGTGGTATACAGAAGGTGATTCGTGGGCTACAGGTTTGAGAGAGATTAACGGAAAGCAGTACTATTTTGACAAAACAGGATACATGGTCGAGGATAAAATTGTTGATAACTTGTATTTTGACAGTAATGGAGCAAGGACAGAATATATATGTGCTGACGGATTTGCAGTTGATAAATTAACTGGTACAATAATAAAATTTAGTAGACAAGATGCTCGGGTGAGGCCAGGCGAACCAGGTATTTCAGTAGTTATACCAAGAGAAATTGGTGGTGTTGAGATAAAAGGTATAGGAGGTAAGGCTTTTAAGATTTGTACTAACA # Right flank : GAGATTATGCATTTTCGGACTGCAATAATGCTATTTTTTATGTTGGAAATGAGAAAACAAAACAACTTATTCTTAATTCAAATTCAAAGATAGATAGTAATAAAATAATAATAAAATCACAAATAATATAATAATTAAAGGTAAGCGTCAAAAATTTAGTAAATAGAATACAAGCACTTCCTTTGATAAAATATCGAAATATTCTATTTAAAAGGAAATTTTAGGAGATCCGTTTGTAGAGAGGGACATTTAGATTAAATGAAAATAGTAAATACATAATGTTCTTAAAAGGTGTGACAATTGGAGTTTGTACGTGTTGCACAAATAGAAAATTGAATCACTTTAAAATATAGGTAGGCTTTGTCAAAGTCTATCTTATTTTTTGTAAAAATATAGATAGAAAATAAAAATTATATGAGAGGAAATATTTTTATTTACGTTATATAATGTGTAAGAGCTTTTACGAAACTAATTGATTGGAGAAATTTTAATGAGGTGTA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //