Array 1 1773-2254 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEDM01000056.1 Streptomyces incarnatus strain DE0205 NODE_56_length_4264_cov_26.146156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1773 29 100.0 34 ............................. TTGTGCTGATACGAGAGTCCCGCACCTCGTGGAC 1836 29 100.0 36 ............................. CGCCGGGGCCGCCCCTGCGGGGCAATGGAATTCCAG 1901 29 100.0 36 ............................. GTGGGCTCGTCTGTGAACGGGCGGTCGTTCTGGGGC 1966 29 100.0 34 ............................. ACCGGTACCCCTTACGAGCCGTCCTGGTCACCAC 2029 29 100.0 39 ............................. AGCCGATCCGTCCGAGGCCGGCCTCCTCCTGGAAGACCG 2097 29 93.1 36 ..................A....T..... CCGTGGGATTACCGGCCGCCGACGACGCAAGGGCCG 2162 29 86.2 35 .....C.....G............CT... CCGATCCCCGGCACCATGCGGAAGTTCACCGCCGA 2226 29 93.1 0 .....C..T.................... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 96.6 36 GCCGTTATCCGCCCTGGAGGGTTCGCAAC # Left flank : GCCTGGAGAACACACCCTACAAGCCGTTCCGCCCTTGGTGGTGACTGACCATTTTCGTCATCCTCGTCTACGACACGGCAGCCGAACGCAACCCGAAGGTCCTCAAGACCTGCCGCAAATACCTTCACTGGACCCAACGCAGCGTCTTCCAAGGCGAACTCTCCGATGCCCAGTACCGCGCGCTCACGTCTGCCCTCGCTGCCGCCATCGATCCGACCTACGACAGCATCGTCACCTACACCGCTCGCTCGGCCGACCTCGTCGCGACATCCACCCTGGGGATCTCTCTCGCCGGCCCCGGCGATATTCTCTGACGGGTTTCGCGATCCGCCCTCGCTCAGCGCATAGGGCAAACATGCTCTATGCGGCGCGTATAGGAAAACGTGCTTCCGATGCCTGGTAGCTGGCTTGATCTGCGTGTATGTATCACCGGCGAGTCGCTGCTGAGTCTGCGCAGCCGAGGACCGGAGCCTACCTCTGAGCAGGCGTTTTACGCTCGG # Right flank : CGTCATCGCCCAATCGTCGTCAAGGGTGCGGAACGCGAAGTCAGCATCAGCCCCGGAGCGTTCGCAATGCCAGCATCCCCCGGATCATGTCCATGGTCTGCTCTGTCGCTGTCATCCGCCCTGGGGGGGGCAACTCGCCCAGATCCAGCAGACGCAGGTCGCTGCTCGGGGCCGTACGGTGCCCACAAGATCACCGAGCTACTCAAGGCAGCTCTCCCGAGCGGCAGCGCGCTGGTCATCAGAGATCTCACGGCAGAGTTCGCTCCAGAAGAAACGGCCCAGGCTACCCAGATTTATACGGCAGCAGGAACTCCGACGAGCCCGCGATCGTGACGACTTCAGGGACTTCTTCGATGGCTGGAAGCTTGTCGATCCCGGCATCGTCCCTACCCCCACTATGACGGCTCCGTGGATGAAGTCATCACCGATCGCGAAGCATCCTGCTACGGGGCAGTAGCCATCTCTCCCTGACTCGTATTCCCCATTCTGTCAGCTGGGCC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTTATCCGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2422-4200 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEDM01000052.1 Streptomyces incarnatus strain DE0205 NODE_52_length_6098_cov_26.594698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2422 29 96.6 36 .............T............... GCAGGGCCCGGTGGCCGACTGGGGCCAGCGTGACGG 2487 29 93.1 36 .C................T.......... GCGCCCACATCGTCGGCGCCATGGTCTCCGAGTCCT 2553 28 93.1 37 ...............-........G.... GTGGACCGTTACTTGCGGGAGGCCCGGCAGGCGCAGG 2618 29 96.6 35 ...................A......... GACCTGCTCGACCCGCACACCGGGCTCGGACTGCC 2682 29 86.2 35 ....T............A.A.......G. CAGCAGACCATGCGCGAGCAGATCGGCCACCTCCT 2746 29 93.1 27 .A.................A......... CGGGCACTCCTGGGCCTAGACCTGCAA Deletion [2802] 2802 29 86.2 35 .....TT..T.........A......... TCGCCGAGATCCCAGTCCGGGCCGCGGTAGATGTA 2866 29 86.2 37 .......T....T..A...G......... CCGGCATTGCCACGCACATGCTGATCGGCTCCATCCG 2932 29 96.6 37 ...A......................... CCGCCATCACCGCCAAGCTGGGGGCCGGCCAGATCGC 2998 29 96.6 36 ........................G.... GTACTCGCCTTCGTGCGCCGCGATCACCACCGGCAG 3063 29 100.0 37 ............................. CCGTCGAGCAGGATTGCGTGGCTCTCCCGCATCCACG 3129 29 96.6 36 .................T........... CGGCGGGGATTGCCGCCGGGTCGCCGTGTCGGCCGG 3194 29 100.0 34 ............................. GAGATCGTGCCCGGCCTGTGGGTCCCGGAGTACA 3258 29 100.0 35 ............................. CGCCGCGACGGGGAAGTGGCGGGCGGTGCCGCTCA 3323 29 100.0 35 ............................. GTGGCCCCGCGGGCGGCTGGTCTATCAGGTGTCGG 3388 29 100.0 38 ............................. CTGGTGTCGTCGGACGGGGAGGCGTCCGAGCTGCCACC 3455 29 100.0 35 ............................. GGGGAACGCAACCCCGGCCTACCCGGCCCCGTTCA 3520 29 100.0 36 ............................. CAGCCGCCGCGGGCCGTGTCGGGGTGCCGGGCTCGC 3585 29 100.0 36 ............................. GGTGCTGGCCGCCAGTGAGATCACCTCCGAGACCAC 3650 29 100.0 36 ............................. GCTGTCCATTGCCGCCGCGATCCGGGGCCCGGACGC 3715 29 100.0 37 ............................. TGGTCGAGGCGCTGGCCGCGGCTGGCGGCGCCGGGTA 3781 29 100.0 37 ............................. GTGGCCGGGGTTGCGTCGCGGCGCGCGCCGTACTCGG 3847 29 100.0 34 ............................. ACGAGTTGGAGCCGGTGACGCTGGAGAAGGACGC 3910 29 100.0 38 ............................. CGCGGCGTCGGGCCGGCCGTGGTAGGCCATCGCGTCGG 3977 29 100.0 36 ............................. GCAGCAAGGCGCCGACCTGGAGGCGGAGTTCTCCAG 4042 29 100.0 36 ............................. GCGGCTGAACGAGGCGCTGGGGGAGCCGCTGCCGGT 4107 29 100.0 36 ............................. GCGTGCCTAGGACGTAAAAGTCGTAGCGCGGATCGT 4172 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 97.2 36 GTTGCGAACCCTCCAGGGGTGATGACGAC # Left flank : CGTGCTCGGCCTTCACTCGGATGTGAGCGGTGGTGTAGGCGACGACGTCGCCCTGCCAGTTGCCGGACTCCTCACGGAGCTTGCCGGACACCGGGTGAGCCTTACCGGAGCGGTGGGCGCCTCGGTCGCCACAGGTCACGGTCGGAGCCTTCTTGTGGCGGAGCGACGGGCCGAGAACGTCGGCCGTCCGGCCGCAGTCGCAGTTGCAGCGCCAGTAGGTGATGACGTCCCCACCAGGACGGTTGTGGGTGTGAGCCTCGGCGACGGACAAGAGCGCCGTAGCGGTTGCCGGACAGGACCTCACACTGACCCAGCAAAGCGTCAACCGCGTGCTGTCGCGGCACGGGCGCCGGTCGAGTGAGGCGCCGCGCGCTTGAAGTGCTGGCGCATCTTCCGCCGATCCCGGTGCAGCCCGAATCGAATGTCGTTAGTCTCCGCGGCCGTCCTCACTCTGGAGCGGCAGCGCTGAAAGACCTCCCTGGCTTCGTCGGCTTCATCAA # Right flank : CCCGAGCATAAAACCCTTGCTCGGCACAGTGTTCAAGTCACCATCAGGGAGAGGTTTTGCAGCGACTCGCCGGTAGTGCATTCCCGCAGGTCAGAACGTTTTGTGTGGCGAAGCGTGTGGGATTCAAGCTGACTGGGTGCCGACAGCAGCGAGGACGTAGTTCGCGTGCCGTGCGTGGTCGAGCTGCCGGACGGTGGGTTGGCCGATAGCACATCGGAGGAGATGGAGGGTTGATTGTCTTGATCACAATGTTTGGCCGCTTGGCAGCAACTATGTTCCCCTACACGGCAGTTGGTGGGAGTGCCGTATGGGAGCGGTAAGACTGGAGGATGCCAGGGTGCGGATCAGGGTGGACGTTGTCCCGGATATGAAAAGTCTGCGGTGGGAGGACGTGCATGGTCCGGCTCGTGCCGTGGTGTACGGGCTGCTGGAGAGCAAGGACGAGGCCCTGGCCCGTTCGTTGCACGACGAGGGGTGGGCCGGCCAGCCGCTGAAGCCGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCCAGGGGTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 299-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEDM01000721.1 Streptomyces incarnatus strain DE0205 NODE_721_length_298_cov_1.208511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 298 36 100.0 28 .................................... CTGCGAGCCGGGGACGTGGACCTCGAGC 234 36 100.0 28 .................................... GTACCGAGCACGCGGGCACGGCGTTGGG 170 36 100.0 28 .................................... AGAGGTGCCGCGATGGCGGTTGCTCACA 106 36 100.0 28 .................................... CCTTTCGGTGTGGTGTCGCGGTTTCGAC 42 36 97.2 0 ......G............................. | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 99.4 28 GGAGTCTATCGAGGAGGGACCGGCAGGGTTCCCAAC # Left flank : | # Right flank : CAGTCGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGTCTATCGAGGAGGGACCGGCAGGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 26672-27222 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEDM01000014.1 Streptomyces incarnatus strain DE0205 NODE_14_length_195329_cov_26.203696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 26672 35 83.3 37 AC..C.A.-.....A..................... CCGAAGTCCGCCGAGGGCGCCGTGGCGATGATGGTGG 26744 36 97.2 37 .......................T............ CAGTGGACCTGGAGCGCGGGCCCGTCCGGTACGCCGG 26817 36 86.1 38 ....A..............A.G.T.G.......... GCCTTCTCCAGCTCGGCCGTGAGCTGGGCGAGGCGTTG 26891 36 91.7 39 ....A.........G........T............ ATCTGCTCCCAGACGTTTCCGCGGCGACCGCGGAGCGTG 26966 36 94.4 38 ....A.................A............. CTCGACGGGGCGGGGAAGGGCGAATTCAACCTGCCGAG 27040 36 97.2 38 ...................T................ GATGTCAAGGCGCAGCCACCGCACCGCCGTGTCGGGGG 27114 36 94.4 37 ..............A......G.............. GAAGAGGACACCGAGTCCGTCAGCGACGACGGCGACG 27187 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 93.0 38 TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TCGAGCACGACCGTGCCGCGGCTCGCGCCGGCCTCGCACTTCGCGGCCTCTACGTCTTCACCCACGCGGACGCCTTCGGCAGCGTCCCTTCGCATGAGCTCATCGACCGGATCACCGTGAAGCCCCTCGGCGAGGCCACCGCCCGCAGCTTCGCCGACTACGGGAGCGTCGACGTGAGGGACGCCGACCTGCCGGACGGCATCACCATCACGAAGCTCGTCGGGTGACCGCGCCCCACCCGCCGGCGAGAGGAGAAGGAGAGCTCACCCAGGTCTCCCTCTCCTCTCTCGAGCACTACGCCTACTGCGCCCGCCAAGCAGGGCTGATTCTGCTGGAACAGACGTGGACCGACGACGCCGCCACCGTCCGCGGCACCCTCCTCCACCAGCGCGTCGACACACCCGGAAACCACGGCCGTGGCACCGTCCGCACCCTCCACGCACTGCCCGTGTGGCACGACGACCACGGTCTGACGGGCGTCTGCGACACCGTCGAACTCC # Right flank : CGGCCTGGACTGGACCGCGGACCGGCAGGCCGTCGTCAAGCGCGCTCCAGGCGCTGGGGTACCCGCCGCAGTGAGCGGAGTGGTAAGCGCGCAGACAGAGGCGGTACACCCGCAATCGCATCACCAGCGCTCCACCAGCCAGGGATTCGCCGTGCACTTTACGACCGAACGAACCCTCGCCGAGACGGGAGTGCGCAGTTGGCTCAGTGATTAGCGGCAGCGGCTGGGTAGAGTCCGTCGGCCAGGCGTCGGGGAGTGTGCCGCCAGCCGTATGACCGCAGCATTCACCCCTCCGGGTAAGGAATGCGGGTGGATGGATCAGGCGAGATCAAGAAACCTCTTTTGCTCCACCGGGCGCATTTCGTGAGCGCGGTTGGCATGTGAGTGGGTAGAGGAATTGCGCTGCTCATCGAGCCAGGCGTGCACGTCTCGCATCGGATAGCGGACGGCGCCGCCGTCGAGCTTGATGTAAGTCGGTCCCTTGCCATCATTTCGCCAGT # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //