Array 1 105366-107345 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLW01000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SGSC 2475 NODE_12_length_116831_cov_0.162903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105366 29 100.0 32 ............................. TCACGCTGGTTTACTCCGGAAACCATAAAGTC 105427 29 100.0 32 ............................. CACATTGCGGCCACTGTAACGACACCGGAAAA 105488 29 100.0 32 ............................. ATTAATAACAACACGCCATTACTCAACATGGC 105549 29 96.6 32 A............................ GTAGCAATTCTGGCGACAATCGAGTCGGCATT 105610 29 100.0 32 ............................. CGTTTGACCTGTCCAGTATCGAACCTGGTACA 105671 29 100.0 32 ............................. TTTAAGAGCCTGACGCATTCAGCGGGGCTGAA 105732 29 100.0 32 ............................. GATTACGCTAGTGGGGTGGAGCCAGAGCAGCA 105793 29 100.0 32 ............................. GCCACCGCAGGTTTATCAGGTACCAAAAATAA 105854 29 100.0 32 ............................. CTTGCGCACTTCACCCTCGAAAGAGACAGTAC 105915 29 100.0 32 ............................. ATCCGGCTTACGCCACTCCCTGACCGGGTGCC 105976 29 100.0 32 ............................. GTTAATTGTTGGCTTTGATGGCTCTGAATCAA 106037 29 100.0 32 ............................. CAACTGGTGTATCTGTATCATGGACTATTGAC 106098 29 100.0 32 ............................. CATTTCATAAATATAGCTTGTGGCTTAATGAG 106159 29 100.0 32 ............................. GCAGTAAGTAGAGCAGAGAGAAGACAAATCAG 106220 29 100.0 32 ............................. ACAGTCCTGAACAGTGTAGTAAATTCGTTCGT 106281 29 100.0 32 ............................. CTTCATCGCCAACCGGTTGTTCGTTGAAGTTG 106342 29 100.0 32 ............................. CCGGACTCACACAGTCAGCGAATTGCTCTTGA 106403 29 100.0 32 ............................. GGCAGTGCTGCCGCGATACGTTCACCAATCCA 106464 29 100.0 32 ............................. GGATGCGCAACGCCGCGCCGGTATCAGCGATG 106525 29 100.0 32 ............................. AAACCATCGACCAACAATAAGAGATAACCATG 106586 29 100.0 32 ............................. CCGGGCAACATAGGTGCCACGCCGGGCGCAGG 106647 29 100.0 32 ............................. GATAAGTCATGAAAGCGGCTTACAGTGATTTG 106708 29 100.0 32 ............................. TGTGGCGAGGAATTGCGTGCACTACGGAAGAA 106769 29 100.0 32 ............................. ACGATTCAGGACGTTTTGATTTCCGGGCTGGT 106830 29 100.0 32 ............................. GACAGCACCACCACGGCGACGATTGCCAACCA 106891 29 100.0 32 ............................. TTGAAATAAACGCGGCTCATACCGTTCTTCTC 106952 29 100.0 32 ............................. CGCGGGGCACGTATGCCACCCATGCTGGTGGG 107013 29 100.0 32 ............................. TCAACATTACGCAGCACAAGCCAGTGATACGG 107074 29 100.0 32 ............................. TCATCATGGTTGACTACGAAGGAGGACTAAGC 107135 29 100.0 32 ............................. TTGTTATTAATCATTTCATTCTCTCGGTTAGT 107196 29 100.0 32 ............................. CCGTAGCTTGGTTGTGGACTCATCCTAACGGG 107257 29 96.6 32 ....A........................ GCAACAGTGCTGGTGGAATTAAAAACACCGAC 107318 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116091-116790 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLW01000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SGSC 2475 NODE_12_length_116831_cov_0.162903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116091 29 100.0 32 ............................. GAAAAGGCAATAAAAAAACCCCGCTCAAAAAT 116152 29 100.0 32 ............................. GTGATCGCCCGGGAACTCGGCGATCAACGCAT 116213 29 100.0 32 ............................. ACTCGCTTGCCCTGAATCCAGCCCGTTCCGGT 116274 29 100.0 32 ............................. TAGTCAACGATTTTACGGCGAACGTCATCAAC 116335 29 100.0 32 ............................. GAAACCGTATCCCGCTAAAGCTGGTGAATAAA 116396 29 100.0 32 ............................. GGTACTGTCAGATTATCCACCAAGTTGTCAAG 116457 29 100.0 32 ............................. ACCGAGAAGAAACTGCAAGCTGAACTAACGAG 116518 29 100.0 32 ............................. CCAGTGCAACAACTGGCAGCTATCACCGCCAT 116579 29 100.0 32 ............................. TGGGAGGGTAGCTTCATGATTGCGCTTATGGC 116640 29 100.0 32 ............................. GATTGCGCGATCAGGTTGCGGCGCCCGGGTAC 116701 29 100.0 32 ............................. GGGACGGGAGAGGTTATGGGGTACTGGGTAAT 116762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATACCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATCACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAACACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGA # Right flank : GCCGAGACATTTTCCCGGCATCAAATTGATATGTGTTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-618 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLW01000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SGSC 2475 NODE_15_length_105907_cov_0.159033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40 29 100.0 32 ............................. GCCGAGACATTTTCCCGGCATCAAATTGATAT 101 29 100.0 32 ............................. CCTACGCCATGTGGATCAGCGCCGCTTTCGCC 162 29 100.0 32 ............................. GAGAGCGAGTCCCCGGCGGTCATTCAGGATGG 223 29 100.0 32 ............................. GTGTTCTCTGGCTGTTCTCCGGTAATGAGCCA 284 29 100.0 32 ............................. GGGCGTCAGAATGATTTACGATCCACGCAATA 345 29 100.0 32 ............................. TTGATGCGGGTGATGCAGCTGTTAAGACATAT 406 29 100.0 32 ............................. GCATGGGGGTTCAGGCTGATGACAATGAAGGA 467 29 100.0 32 ............................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 528 29 100.0 32 ............................. GCGATCATGCGGGTGAATCAAGAGCGTCACTG 589 29 100.0 0 ............................. | A [616] ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCGATCGCCGAGACATTTTCCCGGCATCAAATTGATATG # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //