Array 1 63221-62293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFVU01000042.1 Pseudomonas aeruginosa strain AUH-PA15 scaffold_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63220 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63160 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 63100 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 63040 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62980 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62920 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62860 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62800 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62740 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62680 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62620 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62560 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62500 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62440 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62380 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38251-39655 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFVU01000049.1 Pseudomonas aeruginosa strain AUH-PA15 scaffold_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38251 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38311 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38371 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38431 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38491 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38551 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38611 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38671 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38731 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38792 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38852 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38912 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 38972 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39032 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39092 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39152 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39208 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39268 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39328 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39388 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39448 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39508 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39568 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39628 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 364-2012 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFVU01000082.1 Pseudomonas aeruginosa strain AUH-PA15 scaffold_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 364 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 424 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 484 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 544 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 604 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 664 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 724 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 784 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 844 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 904 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 964 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1024 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1084 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1144 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1204 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1264 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1324 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1384 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1445 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1505 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1565 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1625 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1685 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1745 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1805 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1865 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1925 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1985 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //