Array 1 383435-384658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHSW010000001.1 Streptococcus agalactiae strain 179 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 383435 36 100.0 30 .................................... ACATGCCGCCTTTTTGTATGGTATATCGTT 383501 36 100.0 30 .................................... CCTCCGACTTCTGGTGCAGTCATTGCAACT 383567 36 100.0 30 .................................... AATTCCAGTTGGAATATGCGTCAAACGAAC 383633 36 100.0 30 .................................... CGTTGTCTCATTATTTGATAAATATTTATC 383699 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 383765 36 100.0 30 .................................... AAATACAAAAGGTGTTACTGTTTACAACGA 383831 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 383897 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 383963 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 384029 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 384095 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 384161 36 97.2 30 ..........................C......... AACCTTGATAGGCGTACTGGATGGATTCCA 384227 36 91.7 30 ................C.A...............G. GCTAGCATGGCACAACAATAGCGTTGGAAT 384293 36 91.7 30 ...G...............AA............... GCTAGCATGGCACAACAATAGCGTTGGAAT 384359 36 91.7 30 ...G...............AA............... GCTAGCATGGCACAACAATAGCGTTGGAAT 384425 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 384491 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 384557 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 384623 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //