Array 1 44421-48592 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJBW01000017.1 Legionella pneumophila strain 2531STDY5467322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44421 28 100.0 32 ............................ ATATTGCGCTGAGTCAATAATAAACTGGAAAA 44481 28 100.0 32 ............................ AAAAAGAGATGGGAATTAATTAGGCGTATTGT 44541 28 100.0 32 ............................ TAGTACTTTAGCGGCAGAAAAAGCAAAGCTTG 44601 28 100.0 32 ............................ ATATGCTTTGAGATTAATCAGACAAGGCTGTC 44661 28 100.0 32 ............................ GCAGTTGGAATGCTTGGAACACTAGCATATGG 44721 28 100.0 32 ............................ GTTGAGCTAATGTATAGGTCTAAAAACGAAGT 44781 28 100.0 33 ............................ TCATTAAGTATGTTCTCTTAATATAAGTATAGT 44842 28 100.0 32 ............................ TTGGTCAAGTGCTCGTCGTCAAATGTCGCTCT 44902 28 100.0 32 ............................ CAGAGATTAATGCTCTTAGTTCTTTATACAAG 44962 28 100.0 32 ............................ AGTATACCCCATTGCTTCACTGTCCAGTCAAC 45022 28 100.0 32 ............................ AATCATTAAACTCGATTAATACCTCATCTATA 45082 28 100.0 32 ............................ CAACTGTGAGGACTAAACATGAACAAACAAAT 45142 28 100.0 33 ............................ CAACCAAAGCGAACGCAAGATTTATTTTACATC 45203 28 100.0 32 ............................ TTCGCCAAACACTGGGAAGTGGACGATAGAAC 45263 28 100.0 32 ............................ TGATAGAAACCTTGACTGGTCATGTATTGATG 45323 28 100.0 32 ............................ AATACCCTATTATGAGGATTAAACATGAACAA 45383 28 100.0 32 ............................ AACAGCTCCGTACACGTTAGAGTTACTGTCTC 45443 28 100.0 32 ............................ AGATAAAATTGTCAATACTTTATATTTAAATT 45503 28 100.0 32 ............................ AAAACAATATAGATGTACTGTCAATCATAATT 45563 28 100.0 33 ............................ CTAGTATGTAACGTTAAACCACTGATTTTATAC 45624 28 100.0 32 ............................ TGAACGAGTACGGCGAACCAAGATATTATTGC 45684 28 100.0 32 ............................ AGTGACATATTAGAAACCATGGCTCCAAAGCT 45744 28 100.0 32 ............................ TTCAAATTTGCGTTATAGGGCATTTTCTTTTT 45804 28 100.0 33 ............................ AATTCAGCATAAAAAGCATCTTTAACGTTTTGC 45865 28 100.0 32 ............................ AAAAAGAACATAGCCAGTTTACTAGGGCTTAG 45925 28 100.0 32 ............................ ACATATACCAGCAGTACCAGCAGCATTTGATG 45985 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 46045 28 100.0 32 ............................ GGCGTATAATTATCTCGTATGTATTGCTCTAA 46105 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 46165 28 100.0 32 ............................ TATGATGACGGCCTCCACGGAGAACTTGTTAT 46225 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 46285 28 100.0 32 ............................ ATGTAGCGAAGGCGAGGTTCCATAATGTATAA 46345 28 100.0 32 ............................ CACTCGATGGGGTTTTCGGAGAATCATTCAGC 46405 28 100.0 32 ............................ ATTACCATTTTTTTAATCTGCTCAGATAATGG 46465 28 100.0 32 ............................ TTCCAGCTCTAATATTTTACACGCATCATATT 46525 28 100.0 32 ............................ CTGCGGGCTTGGAAATGATGAAGGCTGTTAAT 46585 28 100.0 32 ............................ TGTCTGCCGTGTCGCCGCCGCCAGAACCTAAC 46645 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 46705 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 46765 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 46825 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 46885 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 46945 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 47005 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 47065 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 47125 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 47185 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 47245 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 47305 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 47365 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 47425 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 47485 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 47545 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 47605 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 47665 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 47725 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 47785 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 47845 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 47905 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 47965 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 48025 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 48085 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 48145 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAAGCAAACAGAGACA 48205 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 48265 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 48325 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 48385 28 100.0 32 ............................ AGTGAAGCTATTTTTAACTGGGATAACATGAT 48445 28 100.0 32 ............................ TTTTGCCGCTCTTTGAGAGATATTGCTGTTAA 48505 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 48565 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 70 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : GTTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //