Array 1 57423-62422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMW010000035.1 Bifidobacterium catenulatum isolate NZ_Bifidobacterium_catenulatum_BCJG468_a2_mod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 57423 33 100.0 34 ................................. TATACGCGGTATGAGGATGTGGTTGCCGAGTGTG 57490 33 100.0 33 ................................. AGTGTGTGCATGGGTGCATTGCCAGCATGCTAA 57556 33 100.0 35 ................................. ACCCTACAACGATACGGACACTTCATGCCTGACGC 57624 33 100.0 35 ................................. AAGTCGGGCGTGTTGTGGAAATCAATCCTCCTTGC 57692 33 100.0 34 ................................. TCTTCTTCGGTCGGCGGTGGGGTAGTGGTTTCCT 57759 33 100.0 33 ................................. AATTCGCGCTCTGATAGGACAATTCAGACCCTC 57825 33 100.0 34 ................................. CTCGGCCTTGTATCCGTCGATGCGGTTCAGGAGG 57892 33 100.0 32 ................................. AGTGCTCATTGGTTTTCCTTTGCTTGTTGCAA 57957 33 100.0 37 ................................. CGAGCAGATGGAGGCGTTCGGCACGTCCGCTTCCAAG 58027 33 100.0 34 ................................. AACCATGCTTCGAACAGAGCGTCATCCTGCTGCA 58094 33 100.0 34 ................................. GCGGCGAATGCGCTGCACCTCGGTCTTGGTGAGG 58161 33 100.0 33 ................................. GGATAGTCCTTGCCCATGATCGCCAATGCCTCG 58227 33 100.0 33 ................................. CCGCACTCCGACTTCACGTCCACCAGCTGCCCG 58293 33 100.0 32 ................................. ATCCGGAGAGAGCGACCCTACTGCTCCGGGAG 58358 33 100.0 35 ................................. GGTCGAGGCGTTTTGTTTTATCGAACGAATGGACG 58426 33 100.0 35 ................................. TCCGAGTTGGCGGGTCTTGGCGAAATGCTGCGAGA 58494 33 100.0 34 ................................. GCCAATACGACGACCAGCGCGAAACGTCTCATGG 58561 33 100.0 36 ................................. TTCGACCGAGCCGACTTCCGGGAGGCCAGAAGGGAG 58630 33 100.0 33 ................................. GCATGGAATACGATACGCTTGGCGACATGTCGG 58696 33 100.0 34 ................................. ATCACCATGCTCAGACAGGCCGGCCTGCCGCTTG 58763 33 100.0 34 ................................. CGATTCGACGTGCCCAGCCGGTTTTGCGCACTTG 58830 33 100.0 32 ................................. TCAACAACCTCAACAGCCTTTTCGTCGCTGTC 58895 33 100.0 34 ................................. ATATTTCGCGTGACTATATCCTGCAAACTGACAG 58962 33 100.0 35 ................................. CTTACCGCTCCTTATGCCTATATTGAATGCTCATG 59030 33 100.0 33 ................................. GAGCGAATTGATTACCATTATGTCGATGTTGAG 59096 33 100.0 36 ................................. CGCAAATGGGCCACCAGCTACACGCCATACCGGCCG 59165 33 100.0 35 ................................. TCCATGGCCGACGCCAACGGCACCGAAACCGTCCA 59233 33 100.0 36 ................................. TTGGACGGCGAAGGCAAGAGCAACGTGCTGACCGGC 59302 33 100.0 35 ................................. GTTGGTCAGATTATTGACGGTAGTCTCCAAAGTCG 59370 33 100.0 33 ................................. TTGTCTGTTTCAGAGCGCCGAACACGGTTGGCA 59436 33 100.0 35 ................................. CCTGGAGATCACCGGCAGGTCGAAGCGGCGAATAT 59504 33 100.0 34 ................................. TTTTCAACCCCTGCAATCCACGCGGATTGCGGGG 59571 33 100.0 33 ................................. ATGTCTGCTAATTGCATGGTCTGCTGATTGGAC 59637 33 100.0 35 ................................. AGATCCGGTGAGTGGCACGAATTTAATGTGGGGCG 59705 33 100.0 33 ................................. AATCCGAGCGTGATGAGCGCGCACGCGCCACCC 59771 33 100.0 33 ................................. TACGACACTTTGGAAATCTCACAGACGCTCTTG 59837 33 100.0 34 ................................. ATGACGTTCGGTGATGCGGCTGTCGGCGGCTACA 59904 33 100.0 33 ................................. ATCAGCGCGTGCAGGAGGGCGGGCGTGGAGCCT 59970 33 100.0 34 ................................. ACCGGGGGCACGATGCCGCTCGCCTAACCCTCTT 60037 33 100.0 34 ................................. ATCAGCCATAATCAGTCCTCCTTAATTCTGTTGG 60104 33 100.0 34 ................................. TCAAGACGTTGCTCGACGAAAACAAGGCTCGTGG 60171 33 100.0 37 ................................. CGTGTTGAACGCGCATATCTGTTCGGCGCGGTTGAGG 60241 33 100.0 34 ................................. GGATGACGAGCTGCTCCAGGAACTCGCACGCCGT 60308 33 100.0 33 ................................. AATGTTTGGGAGCTGGATGCAGTGCAGCCACTT 60374 33 100.0 33 ................................. AGTTATATGTGTCCCCGCCAGCCGGCATGGTGA 60440 33 100.0 35 ................................. TACGACACCTTGGAAATCTCTCAGACACTCTTGCG 60508 33 100.0 36 ................................. GTTCCGTACATTGTGTTTTTTTACCTTTCTACTTGT 60577 33 100.0 35 ................................. CTCGTTGTATGCGTAGGCGTTTCCGGCGATGTTCA 60645 33 100.0 33 ................................. ACCATGTTTTAGTCCTCCCTCATGTAGTCGATG 60711 33 100.0 35 ................................. TCCCGCCGCCGGCAAGATGTACGATTCCGAGTCTC 60779 33 100.0 34 ................................. CAGTCGATGGTCATGTTGTTTTCCGCGTCGTACA 60846 33 100.0 35 ................................. ACGTCGGCGGAAATCGAAGGCATCGCCTACCAGCT 60914 33 100.0 33 ................................. TCCGGCAGGACGGTTATCTCGGCAAGACCGGCT 60980 33 100.0 34 ................................. GCGTTTGCCGCGGCCTCCCATTCTTCTTCGTCTG 61047 33 100.0 36 ................................. GCCCGCAGCATGTTGATGCCGTTATCCGCGCACCAG 61116 33 100.0 34 ................................. TGCAAAGTATCGGCGAAAGCGCCCTTGACGATCA 61183 33 100.0 34 ................................. GTCTGGGGTAAGCAGATCGTCACTCATCATCGGC 61250 33 100.0 33 ................................. CTTGACCTGCTTGACGGCACGCCGACCATCGTG 61316 33 100.0 35 ................................. GACGAACTCACCGATGGCCAGTTCACGCCGATCTG 61384 33 100.0 35 ................................. AACACGGTCAATTCCACCAGCTCATTACCGGTCTT 61452 33 100.0 36 ................................. CAAAAATGCCAAACATAGTGTTGAGTCCGGCTGCCA 61521 33 100.0 33 ................................. CAATAGTCATCGGAATGCGCATTGTCGTGCAGA 61587 33 100.0 34 ................................. TGCGTCATGCTTGCGTCGCGCGGGTTCGACTACA 61654 33 100.0 34 ................................. ACCCTCACCAAGACTGAGGTGCAGCGCATTCGCG 61721 33 100.0 33 ................................. TGGCAGATGCCGATGCATTCCGAGATGACGGCG 61787 33 100.0 35 ................................. GATGAGACTGATTCCGCCGACCGTGCAGACGAACA 61855 33 100.0 34 ................................. GGTACTGCAAACGACTACACGACAGACGTGCGGA 61922 33 100.0 34 ................................. TGGCATGGCGAGCAGTGGCAGGAAAAGACTTTGG 61989 33 97.0 36 .............T................... GTCATGCGTATGCCGGTTTGGATGTGGATGTTGATA 62058 32 81.8 33 ...A...-....CA..G...T............ AGCATCGAACCGGTGGAAGAAGAAACCAAGTAA G [62069] 62124 33 81.8 35 ...A...C..G..A..G...T............ CACGAATGCGACGAAGTACGATCATCCACAAACTC 62192 32 81.8 33 ...A...-..G..A..G...T............ GACCTGCACGGTGCCGACCTGTATCATGCCGAC 62257 33 81.8 33 ...A...C..G..A..G...T............ TATACGAAATACGCGGATGTGGATGCCGAACTG 62323 33 81.8 34 ...A...C..G..A..G...T............ TTTTGGACCGTTTGGTCAAGCGAAGCGTGACCGG 62390 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================== ================== 75 33 98.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CCAATGCCGATGAGGACAGCCTGTGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGTAAAATGGCATGGTGCCATAATGATATGGTGTGGGGTGTGCTGGGTTGAGTGTTTGAGCGTGTCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTCTCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACA # Right flank : CGACGTTGACCATTGGGGTATATTCCATGCTATGCCGGCCACGGCTAAGTTTTTGCGTGAAGTTACCGAGTAGGAGGTGTGTTGTGATTAGTGATGCCGAGTTTGATCGTTGGGGCGAAGCCGCCGAACGTGGCGATTACGGTGGAAGTAAGGGACCCGTGATGCATGGTCCTATTTTCCCAGTGGACGCCGATTATCCCGATAGTGTCTCGTTGGGTGTTTCCGCGGACATGTTGGCGTTGGTTGACGCGAAAGCTAGGCGGTTGGGCGTTGGGCGTGATGACGTGATACGCCATGCGATAGCGCGCGATCTCGTTGACGCTTGAGCATTGTCCCGGTTGCTTTTGGCTGCTGGGATTTTGTTTATTTGAACATGTTTGTCGGGGTTCCCGCCTGATGAAAATACCCCAAGAGTGTTCCGCACTCTTGGGGTATTGCTTAAAGCAAACTGATTTATAAGCTTTCTCGTTCTAACGTGGGGCGTTCACCGTCATGCTGCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //