Array 1 20181-20869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBFU010000045.1 Weizmannia coagulans strain CGI314 112739_CBP-1537_contig_59_(1..45006), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 20181 32 100.0 33 ................................ ACCAATTTTGGCAATCTGTTCGGTTGTTACAAG 20246 32 100.0 33 ................................ CCCAGTTTCATATTTTCGTAGCTGCCGGGTCGA 20311 32 100.0 34 ................................ TTTACATTGTTTTTCAATGTTGATCATCATTTTT 20377 32 100.0 34 ................................ CTTAATGCTGTTATCTGCGCTTCTAAATCCTGAT 20443 32 100.0 34 ................................ TGAAACAAAGAAAGGGACAGAGCCGAAAAGGTAC 20509 32 100.0 34 ................................ AGGACTGCATGATTGATGCCATTGAAGCGAATTG 20575 32 100.0 34 ................................ CCGGTCGAGGTTGTGCTTGCTGCATTCGCAAATC 20641 32 100.0 34 ................................ TTTTTTTAGTTGTGTTAACTGAGCAGAACAAGAA 20707 32 100.0 33 ................................ CCTTTACGGCCAGGTGTTGGAGATCATCGGCGG 20772 32 100.0 34 ................................ CGGTACAATGATGCCGTAACTCTATCAGCCAGTT 20838 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 11 32 100.0 34 GTCACACTCCTTGCGAGTGTGTGGATTGAAAT # Left flank : TACAGGGCTTTACTTCAGTGCCACTCTTTGGTTTGGATCAGACGCTTACCAGATACTTAAAACCTAACAGTGGGGAAGGTCCTTAGAATGATTTTTAGTTTTAATAGGATATTCAACATCTGTCGAATTAGACGCCGATGCTGAAATTAATCGTAGTAGTACTGATGACTTTTTGCAGCAGGAAACAGAGTAACACGTTTTAGTTCATTTTATATAGCAGAAAAACAAAAATTAACCAGTCCAATTTATCTCGTAAGAACGATTAGTTAAAAAGTGGTTTTTTAACGTGCTGCTTTTTACGACATAGCAGTCTGTAATAAGAATGCTTTTTGGTGAAACTGTGCGAATGAATAGTGTACATGAATTGCCCATGGGATTCGCACCAAAAATCCAATAGATTTTTCCATATAAAGGAATTTTCGTGTAGCAAAACTTGGGATAATATGGGGTAATTTGTAGATATTCGTCAAAATCTATTAAATTTCTACACGATAATAGCT # Right flank : TTGAAGTAAGGGACGTAACAGCGGAATTGGGGAAAGTGTTGGAAGAACAGCAGCAGCGAAAAGAACAGCGGAAAAAAGAGGAACTGCTAAAAATTGAGCAAGAGCAGGCGTTGCGTGAACAACAGAAAGCAGAGGCCCGCTTGGCGGCGATGTCCAAGGAAGAAAGATTGCTCTTTGCCATACAATCATTAACAGAATCACAAGCAGACCTGGAAAAAAGCAAATCGGAGTTATATGAGGAGGTAATCGCACAGCAAAATCAAGAAGCTGCCTTAGCTCTCCGACAATATTGGGAAAAAACAGGCCAGTGGAAAGTCAATAAGAAAAAGAAAAAACAGTATGATAAAGTCCTATCCATTAAAAAACTGTTAAATATAGAGTAAAGGCACGGGATCACTGTAAACAGCTTTTTTTGATGTAAATAGCGAAAGGAAGAAAACTCTTATTCAAGATTTCTTCCTTTTTTCTATGGAAAATATTCAGCTGCTTCAAATTTATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCCTTGCGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 49746-42741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBFU010000010.1 Weizmannia coagulans strain CGI314 112671_CBP-1537_contig_75_(1..58675), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 49745 32 100.0 33 ................................ TCCGTTGCCGCTTTTAGCCACTTGTCCAACTTC 49680 32 100.0 34 ................................ ACCTCACTTTAATCACGAATACTAGTTCCTTTTT 49614 32 100.0 32 ................................ TTTTAAATTATCCTCGGTTAACTCAAGGTCAG 49550 32 100.0 33 ................................ AGTAACGTATTTGAGAAGCTTATTTTCGTCTTG 49485 32 100.0 34 ................................ TTTAAAGGACATTGAGGAAAGAGCAGCGCAAATT 49419 32 100.0 34 ................................ GTTTATCACCTGGCGGAATCTACACAAACGCCCG 49353 32 100.0 34 ................................ TCCATCTGCAATTAACATATAAAGCGCAATGCCT 49287 32 100.0 34 ................................ AATCATATTTGAAGCGAACAGGTTACAATTTGCC 49221 32 100.0 33 ................................ AATTCCTCTGATTTCGCATCTTTTTCCCCTTTA 49156 32 100.0 34 ................................ ATCCAAGAATTTAAACGGATGCGTGAGCAGTTGG 49090 32 100.0 35 ................................ ATGGGTGCATAAGGGATATATAGAAAAAATTGAAA 49023 32 100.0 34 ................................ AATTTCATTAAATGCCACCTTTTGCGACCTCTTT 48957 32 100.0 34 ................................ GTCATGCTGCTGTCATAGTGGATGTGTCCACTAA 48891 32 100.0 34 ................................ AGCCCGTTAAACATAGATCTGGCCGCGCCGTTTG 48825 32 100.0 33 ................................ AACGTAATTGCGCAGCCCTGCGTCATCATTATC 48760 32 100.0 34 ................................ TCCCCAATGCCGTTAACGATACCAACAAATTATC 48694 32 100.0 35 ................................ AAAGGCTTGTACACTCATCTTCTTAGCTGCTGCAC 48627 32 100.0 34 ................................ TGAAATCTCCGGTCTGCTCCATGACCGGCTGAAA 48561 32 100.0 34 ................................ TATATTGCGGTCATGCTCCGGGCTATGCTTGCCA 48495 32 100.0 35 ................................ TGCTAACTGTTGACGCATCCTTTTAAATTCTTGGA 48428 32 100.0 34 ................................ TCAACCCACTTTTTTCGATTGTAGAAATCGACAA 48362 32 100.0 32 ................................ CGGCCACTCTTCGATATTGCGCCAGTCGTTAT 48298 32 100.0 34 ................................ AAACAAGGAACTATGAAGGGCAGGACGGGCGCCG 48232 32 100.0 33 ................................ ATCCGTTGTATTTTGTATCAGCCCGGCTTTGAA 48167 32 100.0 33 ................................ AGGATGGTGAGCTGACAATTATAGCGGCCAGGC 48102 32 100.0 34 ................................ GCATCATCGTCCACGAGATACTCCCGGCCGCCGT 48036 32 100.0 34 ................................ CGGGGCAACCACGGGCAGAAACGGAGCAGGAACG 47970 32 100.0 35 ................................ TATAAGTCTTTCCGTTCTTTTTAAAGCTATCTTGC 47903 32 100.0 36 ................................ CGGCGTTAAGTCAAAATTTAGTAATATGAAAAATAC 47835 32 100.0 33 ................................ CGATTACAGCCGGCCAATTATTTTTCTGGCTAT 47770 32 100.0 35 ................................ CAGCTAGCAAAGAGAATATTCTAGCGGCAAAGCGG 47703 32 100.0 35 ................................ ATAAAAAGCCAGGAAGAGTTCAATAAAAAAATCCT 47636 32 100.0 33 ................................ CGGTTGCCAACGACGTCAAACTTGGCGATATTA 47571 32 100.0 35 ................................ AACGAGTAGATAAGCCAGAACCAAAGCCTGCGACA 47504 32 100.0 35 ................................ GGTTCCGCCCATTCGCTTGCAATCCATCCCGTGCC 47437 32 100.0 33 ................................ TGAAAGAAAACTATCTGATCGCGGATACGGCAG 47372 32 100.0 33 ................................ CTTGCAGGTTATGGGCGTATTCCAGCCGGTAGC 47307 32 100.0 35 ................................ AAATACTTAAGAAAAAATATGAGCATCTTACCAAT 47240 32 100.0 34 ................................ TTTAAAAATAGGGCGGGAGCTACCCGCCCGATTA 47174 32 100.0 35 ................................ GGGATAACCTTATTCATGCTTTCGCCGTTCACCTT 47107 32 100.0 34 ................................ ACTCGGCTATTTTAAAACGGATGAGGGTAAGCAG 47041 32 100.0 34 ................................ ATCTAATAGGCCGTACTTTTTGGCCAACCAGGAA 46975 32 100.0 34 ................................ TTCATGGGGCGGAGTAGTGGGTTTGCAAGTATCC 46909 32 100.0 34 ................................ TAAAATGCGTTTTATCATCCCCACGCCTCCTAAT 46843 32 100.0 32 ................................ GCCTTTGCTTGCAGGTCCTGCACAATCTCCGG 46779 32 100.0 34 ................................ TGCGCTAAATTGATTTGTAAGCTGATCGAGCCAA 46713 32 100.0 35 ................................ TTCCCAGGTCATGGGAACATTTTTAATGGATTTGA 46646 32 100.0 34 ................................ GGTCCGGGAATTTATGCATTAGCTTCCTGATTTT 46580 32 100.0 35 ................................ AGTTTGCCAAACCGTTTATTGGTTAGGTCCAGAGC 46513 32 100.0 33 ................................ AACCAATGGACATCACCCCCTTAAATACATTTC 46448 32 100.0 33 ................................ GACATCCGGTTGCTTGCGTATCAGCACCATAGC 46383 32 100.0 33 ................................ TTTTTATTAATACTACCCTGGTCATACATAATG 46318 32 100.0 34 ................................ ACAAAGTCCATCAATCCAATGTTCGGGTTTGCCT 46252 32 100.0 33 ................................ GATTTTTGTGGCTTCCGCTGTAACATCCACGCC 46187 32 100.0 33 ................................ AAGATACTGCCGAATGGGCGTCGGCCAGCATAA 46122 32 100.0 32 ................................ AAGGCTTTAAAATGCGTCCGTCCGCACATTAA 46058 32 100.0 36 ................................ TTTAACAAGCTCCCTGGCGTGGCCTAGGGTTTCGAG 45990 32 100.0 35 ................................ TACAAATCGCATATATGCTACTTTGTACTCCAAAC 45923 32 100.0 34 ................................ CGGCTGTGAAAACCCCGTCAACACCAAGACTGCC 45857 32 100.0 34 ................................ GCGTGTATTGGCATTGTCATTTGCCGCTTTAGCC 45791 32 100.0 34 ................................ AGTTTGCCTGGGGGCGCAAGCTAAACGGATCCGG 45725 32 100.0 34 ................................ AGCCCATAGGCCGCGCTGGCCGGATGCGCCAGAA 45659 32 100.0 34 ................................ CTTTTTCTTTCAATGCTTCGATGTACGGTTCAAA 45593 32 100.0 36 ................................ CAGCATGACAAAGAACGGATCCTAAAAGCCCTAGCC 45525 32 100.0 35 ................................ GCTTGCATCAATCGGCAGGATGCGGATAAACGGGT 45458 32 100.0 35 ................................ CGTACGGCATGCCATCGGATGGACGGGCTCCGTCG 45391 32 100.0 33 ................................ AAACTGAAAATCTTGTGCTTACCCAGCAGGTGA 45326 32 100.0 33 ................................ ATGGCCAGCGCGCGGATGACATATGGCCGCCAA 45261 32 100.0 33 ................................ ATCCAAGCTTTCTAAGCATTCATGCGCTGATTC 45196 32 100.0 33 ................................ GCACCAAAAGGCACACAGGTAGTAGACGGCGAT 45131 32 100.0 33 ................................ CGACATAAGCTAATACCGCCGGAATCCCTGCCA 45066 32 100.0 34 ................................ GGTTGCCGTTTTTATTAGTTGGCTTAGTAGGCGT 45000 32 100.0 33 ................................ TATGATTCTGCGCTGTGGAAGCGTGAGAGACTG 44935 32 100.0 33 ................................ AAAGGGGACACGGCGGCACAGGAATTTGGCGCC 44870 32 100.0 32 ................................ AATGCGGTTGCGGCTGTAGAAGCGTCCACCCC 44806 32 100.0 33 ................................ GATATTCCAGTTAGACGCCATATTTTAAGCTCC 44741 32 100.0 33 ................................ AGCCGCTTGTCATGCACCGCGTTGTGGCACTGG 44676 32 100.0 33 ................................ GGCTGTCAGAGCTTGGAAATGCAGAACGTCTTG 44611 32 100.0 33 ................................ GTTTTGTTTAATTCGGCAATTGAGGGATTGGAT 44546 32 100.0 34 ................................ ATAAAGCAGATCATCGGCTTCTAACGCGTAATAG 44480 32 100.0 34 ................................ ATCTCCCATGTACTTTAGAATAAATGCCTCTCTC 44414 32 100.0 33 ................................ ATACGCGGTTTTGTTCTCGGCAATCAGATGGAC 44349 32 100.0 34 ................................ TTTTTCAGCGGCTTTACGGGCATTAATCGCATCT 44283 32 100.0 33 ................................ TTTTTTATCGTGATAAACCTCAAAAAACTCGCC 44218 32 100.0 34 ................................ TTAACTTTGGTACTAAGATGTTACCAAAAGTTTC 44152 32 100.0 33 ................................ CAGGCTTTTGACTTGGTCGGCTCCCTTATGCCA 44087 32 100.0 33 ................................ GCGTACAACAGCCAAATGTCACCTTGCTTATAT 44022 32 100.0 34 ................................ CGTAAATGACCGCATGCTTGTTGCCGGCTGAAAC 43956 32 100.0 32 ................................ CCATCTTCTCATTTATAATTCCTCCTAATTAA 43892 32 100.0 34 ................................ TACATTTGAAACTGACGGAAATGGTGAAAAAGTT 43826 32 100.0 32 ................................ ACATGTATCCGCCGGGAATGAATATATACCGG 43762 32 100.0 33 ................................ GATTGATTACTTATGTGTAGTAGAGCCCCAGGA 43697 32 100.0 33 ................................ ATGACCGTCACTGTCACATTTGCATAGGGTGAG 43632 32 100.0 34 ................................ ACATGTATCCGCCGGGAATGAATATATACCGGAA 43566 32 100.0 34 ................................ GATTGATTACTTATGTGTAGTAGAGCCCCAGGAA 43500 32 100.0 34 ................................ CCGTCGAAAAGTGATCGAATATTTTGCCCGTTCC 43434 32 100.0 34 ................................ CATAAACCTGATCCAGTTCGGACACTCGGCATTT 43368 32 100.0 34 ................................ CTGTATCGCTTCCTGCAAACATGCCTTAATATAG 43302 32 100.0 34 ................................ CGCAGGTGGAAGCGGAGCGGGAACGGTTGACATG 43236 32 100.0 33 ................................ AGCTCGTAAAGTTATATTTTTGCAATCTGCACA 43171 32 100.0 34 ................................ TCTGTAATTTCGGGAGTGACCGGTCTGCTTATGT 43105 32 100.0 35 ................................ CGCTGTCCCGTCTGGTGTGATCGTAATAGGGTTTG 43038 32 100.0 34 ................................ CGAAACTGACAAATAAAAGACTGTTGCAGGCCGC 42972 32 96.9 34 ............A................... AGTTTGCCAAACCGTTTATTGGTTAAGTCCAGAG 42906 32 96.9 34 ............A................... CTTTTGATAAATGCATTGCACGACCGGATGAAGT 42840 32 93.8 34 ............A......A............ GTGAATCCAAAAGGTAGATAAAGAAACCTATGCC 42774 32 78.1 0 ..........G.A.......A..A.A.A...C | A,G [42758,42769] ========== ====== ====== ====== ================================ ==================================== ================== 107 32 99.7 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : TGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAGGACCCATTGATCTTTTAGAGTGCGAAGGTGTAGCGCACACGATTTTTCCTGTGGGTTCGCACCATAATATTAACCAATATTTTACATATATTGGTCTTGCTTGGTAAATAGTTCTTTGTTTTATCAGAGGAAATAGCGGAATTTGGTTGTTTTGAAAACACACATTCGCATTTTTTGCCAAATTCCGCT # Right flank : AACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTACCCTTTGATGCAACGCTTGGCATTCCCGATGGAATTGAACAATTTTTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAGCCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCGCCTTCTTTTTTCTTTAGATCCAAAAAGAGGCGCAGATCGTGCAGGCACCAGTGACAAACCCTCTTTGTGAAATTGCCCTTGTTTTTATAGTCCCCGGAACCGGGTCCAGGGCTTTTCCTTATTCACCCGCCCCCCGATTATGTATTTCTGTCATCCGCATCGTCCAGTTCCCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3589-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBFU010000011.1 Weizmannia coagulans strain CGI314 112760_CBP-1537_contig_16_(1..48890), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3588 30 100.0 35 .............................. CGATACTTGGCTTTTTGGGGAGTATCGTGATTTTT 3523 30 100.0 36 .............................. TCCGCATATCTTGACATATAAAAATAATATCGTAAC 3457 30 100.0 36 .............................. ACATAACTATCAACGGCAGTGCCAGAGATAGACGTC 3391 30 100.0 36 .............................. ACGGTGCGATCCGGTGCAGATTTGCATAGCCTTATT 3325 30 100.0 36 .............................. AGCTGTCGCCTACTTCGAGGAGGAAACACGATACAA 3259 30 100.0 36 .............................. TTACTTTAGAGCAAAAACCGTTGCTGACGCGAAGTT 3193 30 100.0 35 .............................. CATGTGGCGGACGTGCTGGCGATGGCGGCGAACAA 3128 30 100.0 36 .............................. TTGTAAGTAAAATTTACCTTACCCTTCGGAAATGTT 3062 30 100.0 34 .............................. GCGTTGCCGCAGATTATTACCGCGGGTATTCAAA 2998 30 100.0 36 .............................. ACGATACCGAAGACCGTCTGCAACGCCGTATCGTCA 2932 30 100.0 35 .............................. GATAGAGGGGGGACCACAACACAGAAAATTGAGGC 2867 30 100.0 38 .............................. TTTTGAAGGTGAAAAATTTGCGGTTTGTGAGGATGAAA 2799 30 100.0 37 .............................. GGATTTCTCTTCATGATTCCAAGACACACCATGAGGC 2732 30 100.0 35 .............................. TCACGTTCGATGCGCTTGTAGACAAATTTGTTTCC 2667 30 100.0 36 .............................. GCCGTTGAGTGATGATAATAGGTGTCGTTTGTTATG 2601 30 100.0 36 .............................. TATTCGGCCAAATTGCGGATTTGCCGGTCCATCATC 2535 30 100.0 36 .............................. TGTTTTCCCGACTTTTGCAGGCTATCGGGAGTATGT 2469 30 100.0 34 .............................. TTGTCAAGGGCGGCTTGGAGTGTAGCCGAAACGG 2405 30 100.0 37 .............................. TAGACAACAACATTTACTGGCTTCTCTCCTCCTGGCA 2338 30 100.0 37 .............................. GAAGGAGGCCAAAATTTCTACTGCAGAGTTAGATAAA 2271 30 100.0 36 .............................. TCAGTTCGTTTACATCTGGACCGACCAGTTAGAAAT 2205 30 100.0 36 .............................. CTTTCATTAGCCCAGGCGTATTGCCACTTTGTTTTG 2139 30 100.0 36 .............................. TGTTTTTGCTTTTCAATTTTTCGACAATGTCTTTGT 2073 30 100.0 36 .............................. TCTACGCGCCGGGCTTTTTTAAACCGGCTACGGACA 2007 30 100.0 35 .............................. CAGGGTACCAAGAGTATGTGACTGCTTACATTGAT 1942 30 100.0 35 .............................. GAAATAAGGGAACGAATTTTTCGGGGTCGGAAATT 1877 30 100.0 34 .............................. ACGCCGTTGTCATGCGGGTTTTCCGGCTGTTGGC 1813 30 100.0 34 .............................. AAAAATACGACATACAATGGGAAAGTCGGCTCGA 1749 30 100.0 35 .............................. TTATTTAGTCCATTATTATTTAGTTCATCAATACT 1684 30 100.0 36 .............................. GGATCATGAACGTAAGTTACTTTCATCCATACCACT 1618 30 100.0 35 .............................. CCCGTTCCTACATTCGTCCGCGCCGCCACTAGTTC 1553 30 100.0 35 .............................. AGGGTACGCTCCGCCGATTTATAAAATTTTTAAAA 1488 30 100.0 35 .............................. TTTATAAACTTTTGGTACATTTCCCTTGTCAATTC 1423 30 100.0 34 .............................. ATGCTGGTCTTAACCAAAAAGTCCACAGTCAATT 1359 30 100.0 36 .............................. AATCGTAGGGGGTGTGATTATGGTGGCGGCTTTGTA 1293 30 100.0 35 .............................. CCGCTTAGCGTTCCGTGTACTTCCCACATTTTCAC 1228 30 100.0 34 .............................. CACTGACAAAGCCAAAGCGCACTTCCATTTTTGT 1164 30 100.0 34 .............................. TATTCCTTTACCGAGAAAAGTATTACAACAAAGA 1100 30 100.0 36 .............................. ATCGCTTTGACAATTGAAGCAGATACTTCGTCTTCG 1034 30 100.0 35 .............................. TGTGGAAAATGCTTAGTTGATGAGCGTATTAAGCA 969 30 100.0 36 .............................. TGAACAACGCTTGGAAAATTGCTCGTAATGGCGTGA 903 30 100.0 34 .............................. TTGTCGATGGCGGGTATGGCACGGTTGATATAAC 839 30 100.0 36 .............................. ATCAAATGACGGTGCAATAACGCCATACCACCAGTG 773 30 100.0 37 .............................. AGATGATGGACTTGATGATAACGAGATCGTAATAAAA 706 30 100.0 36 .............................. ACCGTATCTATGTTGGCGAAAAGATTGCGGTAAGTG 640 30 100.0 36 .............................. ATGTAAAATGCCGGCACACTGAAAAGCTGTACAATG 574 30 100.0 35 .............................. GTCACAGGATTGGCAGGTTCGACTCCTGCCATCGC 509 30 100.0 36 .............................. TTGGCTTGCTAATATTTGGCGTATACAAACTGGCCA 443 30 100.0 36 .............................. AGCTTGCTATATGTGCCGATATATTTTCTTTTTCCT 377 30 96.7 38 ....................A......... GTTCGATAAAATCGACCTCATGAACTTTGAGGCGAATA 309 30 100.0 25 .............................. GCGCGTCATTTACGCGATCGAACCT Deletion [255] 254 30 80.0 37 ..C..G.AGAT................... TAGACTTTGGAGGCAATGGCCTTCTGCAGCCGGCGCT 187 30 100.0 34 .............................. ACGGTTTATAATCTTTTTCAATTCCATCCGTAAC 123 30 93.3 0 ...........................G.G | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 99.4 35 GTTGAACTTTAACATTGGATGTATTTAAAT # Left flank : ATCTAGAAATCCACACTTGGGAAAACTACCTATTACCGATGTTTGTTAGATTTTCGTCACGGATTCAGGTTTATGATATAAACGAAAGAAGAGTACAAAAGGTTTTTAAAATTTGTAAAAAATATTTATATCATCATCAAAAATCTGTTTTTCGCGGTGCTATTACACCATCACAGCTAATTTCTCTTAAAAAAGAGCTTAATAAAGTAATTCATAAAGATGAAGACTTCATTTCTATTGTTAAGTTTTTAAGTGAGTTCTACTTTGATGAAGAAACAATCGGCAAAAACCCGGGAGATGGAGAATCGATATTTTTATGACTCACTTTTTCCCAACCGAATAAATACGGCACAACCGGCGATCACTTGGTATAAAAGGCTTCTGAGGGAATTTGGATGGACATATCAAAAAAACGATAACGGTTGGGAAAAAACAAACAATCCACTTGTACCAAAGTCTCTAGCTGAGGTATACTTGCAGTAAGTGTTGAAAATACTGGG # Right flank : GCTTGCTGAATAAGCAAAAGTTCCAGATTTGACAAGGATTTTGGCTGTATTTGTCGAATATAAAGTGTAAGGGTTTCAAAGGAAACACGTAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATTGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //