Array 1 12353-9177 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCR01000029.1 Veillonella tobetsuensis strain PAGU 1579 sequence029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================= ================== 12352 35 100.0 39 ................................... TCTTTAAAATTTTCAAGGCCCATCTTTCAGCTTTTGTTG 12278 35 100.0 33 ................................... ATCATAAGATAACCCTAGTTCTGCAATATACTC 12210 35 100.0 37 ................................... CTTATATAGTTATTTATATCTTGTGTTGCCGTCATCA 12138 35 100.0 37 ................................... TAGACTACCTTTAACTATTGCTGATAGAATTTTTAAT 12066 35 100.0 38 ................................... TGACTAAAGCTTATTCTACTAGCTGTTCCGGACTAAGC 11993 35 100.0 38 ................................... CTTGAATGCGTTAGTTAGAGAGTGGTCTAATATCTCAA 11920 35 100.0 39 ................................... GGTAACGATACATATTTAATGCAACGTTATCACGGCCGT 11846 35 100.0 39 ................................... ATCATATTTCACGGCAAATTTATACTCACCTTCTGGACA 11772 35 100.0 41 ................................... ATATTCAGATTCTTTGACCATATCTAAGATATCTGTTGAAA 11696 35 100.0 39 ................................... GATCACTGAATCTTGCTACAATCAAATCATAGATACAGT 11622 35 100.0 42 ................................... TTCTATGACAGCACATAGTTCTTATGCTCCTGTGATTGAATA 11545 35 100.0 37 ................................... TTAACTACAGAACGACGACCCAATACACCAGCTTCAA 11473 35 100.0 38 ................................... GTATCCTAAAATTTCAATAGACTTGTTTGCCCTTACAA 11400 35 100.0 34 ................................... TGTAATAGTTCTCGAGCTGCAACGATACAACGAC 11331 35 100.0 38 ................................... CTTACCAGCACCTCATTATTAGTCGGCTAAGATTGCTC 11258 35 100.0 38 ................................... TTGTTCGCATCATTAATGATGCTTGTAATGGTTTCACC 11185 35 100.0 38 ................................... AAGGAGGAATAAAAATGATTCATAGGAGTATATTACAA 11112 35 100.0 39 ................................... TTATAAATAAAAATGGACTACATTAAATTAATGGGAGAT 11038 35 100.0 39 ................................... TTTCATTGCCAGAAGCAATGTTTTGTTCAAGAATATTGA 10964 35 100.0 36 ................................... GTCATAGCTTTTGCTTTTTGACCCTGCTCAACTATC 10893 35 100.0 36 ................................... AAAAATAGAACCAGTAATAGAACTAAAATTAAAAAT 10822 35 100.0 40 ................................... TAAAGTCGTTGACATTAAAGTAGAAGAAAAACCTGTAGAG 10747 35 100.0 39 ................................... GAGCTATATGCTGGTAGAAAGTAAACAATATATTCATAC 10673 35 100.0 37 ................................... GCTTGCGTGCCTCAAGTTCTGCAGAACGTTGCTTTTG 10601 35 100.0 35 ................................... CGCGCTTTTTCTGACTTTTTCTATTGTCAGAAGGA 10531 35 100.0 39 ................................... AGCAGCCACAAATTTACCATCGTTTTCAGCGATCTTAGG 10457 35 100.0 40 ................................... GGCTGAGGTCAAAGAAGCTAATAAAGAGATTATGGAAAAG 10382 35 100.0 40 ................................... CATTTCTAATTTCTGATGGAACTTTCTCTAATAGTTGTTG 10307 35 100.0 38 ................................... ACGCAGTACCCAATATATACTGCAATCATAATACATAT 10234 35 100.0 39 ................................... ACGGATAAGTTCATCCATTTCGATCCTAGCTGGATCTTT 10160 35 100.0 41 ................................... CCATTCGTCATTTATTAGATACGCCAACCGAACAAGAAGGT 10084 35 100.0 41 ................................... AGAAGCACAGTGGGCGGGCACCTGTCGCCGGACGATATTTA 10008 35 100.0 40 ................................... TTTTCTAATAATTTCTTTATGAAGATTTCTACTTCATCTT 9933 35 97.1 37 ................A.................. TTAAATACTTCTTTATATGCTTCGATTTTATTCATGA 9861 35 100.0 36 ................................... GAATTAATATTGCCGTTTACAAGTACTGTATTCATG 9790 35 100.0 42 ................................... ATTCCCCAATCTGGATTTGTCCAACCTGTTCAGTGAAAGATG 9713 35 100.0 41 ................................... TCCACGCCGTTAGGGCAAACATACCAGCCGTATTCATTATG 9637 35 100.0 42 ................................... CCATCCAATGTTCCAATTTATTTAGAGCAAAGCCTCTCAAGT 9560 35 100.0 39 ................................... CTGCATACACTAATAACCCTAAACAAACACCATCTAATA 9486 35 100.0 42 ................................... TTGGACGATTGTCCAATACATTAACACTGCTCAACAAATGTT 9409 34 88.6 89 .........................A...-.CG.. GAAGGGTGCGAGGCAGCAGAGGAGCGAAGCGACGATGAGGGCCGCACATCTCTAGTCCCTGACCGAAGGGAAGGGAAAACAAAGGTGAT 9286 35 85.7 41 .AA.T......A.C..................... ACGGAATTCATTTCTTGAATTACACTATGAAGTTGAGACCC 9210 34 88.6 0 .............C...............-.CG.. | ========== ====== ====== ====== =================================== ========================================================================================= ================== 43 35 99.1 40 GTTGCAACAGTGCTTACCGCTTGCGGTATTGAAAC # Left flank : GATGGATGTAGCTGTTGATGCAGTGGTAGATGTGTTATTAGATGAATTATTTGATGATTTCTAGGAGGTGTATAATATGTTATTAGCTGTAGACTTTGGTTTAGTACATGTATGTGTTGAGGGGTAAATTTGAAAGTAACAATTGAATATAAGAATCGATAGACCTATTCGTATGATGTCATATGGATAGGTCTTTTTTTGCCTAAAATCTAGACAAAAAGGTTTTCTGCACCCCAAAACTGGTTATAAACAGAGATAAATCCAGATATTACCTACGTTTTGTGAAAAATAGGTCTGTTGGAAAACCTACTCTCATATTGACGTAATTTCAGAAAACCCTTATAATTACTGTATCCTTAGAAAAAAGGTTTTCCACCAGTATTTACCTAGGTTTCTAGACCCTCTAGGACCTAATGTGGCGAAAATTTACCGTTTACGGTTTGAGGTTTTCCAAAACTAGCTTTTGGAACCGCATAAATACTGGCTTTCTAGACCCCGCT # Right flank : GAAGGGTGCGAGGCAGCAGAGGAGCGAAGCGACGATGAGGGCCGCACATCTCTAGTCCCTGACCGAAGGGAAGGGAAAACAAAGGTGATGAATTAACAGGACTTACCGCTTGCGGTATATATCACTTGAATAGTATTAAACCCCGAGAGAATCATTTTGATTTTCTCGGGGTTTTTGTGTCTTAGTTTTCTTGAATATATTCATAGTCATTTATTTTATATACTTAAGATGTAGCCGATGAGTTATGGAAATCTAGATAGAGGATACGTCCTAGTAATATTGATACAGAGATTTTCAAAATGAAGGTTATACTATGATTAGTGGTTTTATTAGTTAGTAATTTAGAGGAGGAATTAATATGTTTCCATTATTAGGTGCTGTAGCATGGGGAGCTTTCGCAGAAGGCGTAACATTAGGTGTTTCAGTATATCAAGCCGTACGGTCTCGGGACTAATTGCGGGTTGTTTATACAAGAAAGGAAGGTGATTAAATGGTTCCGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 3222-2976 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCR01000003.1 Veillonella tobetsuensis strain PAGU 1579 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 3221 28 92.9 47 ...............A.....A...... CTTAGGTTATACAACCATCAAGCGTTTAGAGGATCGATATGGTTTCA 3146 28 100.0 42 ............................ CATTGAGAGATCTCATCTTAATGTAGTTTTAAGAGAGTTTCA 3076 28 100.0 45 ............................ CGAACGATGGTCGATTGGTCATGACCTTCATCATTGTGAGTTTCA 3003 28 92.9 0 ...............A..A......... | ========== ====== ====== ====== ============================ =============================================== ================== 4 28 96.4 45 ATACCGCAAGCGGTAGGTGCTGTTGCAA # Left flank : CAAATTGAACCATCTAATCACCTCTTTTCTTGTATAAACAACCCGCAATTAGTCCCGAGACCGTACGGCTTGATATACTGAAACACCTAATGTTACACCTTCTGCAAAAGCTCCCCATGCTACAGCACCTAATAATGGAAACATATTAATTCCTCCTCTAAATTACTAACTAATAAAACCACTAATCATAGTATAACCTTCATTTTGAAAATCTCTGTATCAATATTACTAGGACGTATCCTCTATCTAGATTTCCATAACTCATCGGCTACATCTTAAGTATATAAAATAAATGACTATGAATATATTCAAGAAAACTAAGACACAAAACCCCGAGCAAATCAAAATGATTCACTCGGGGGTTATTAATACTATTCAATTGATACATACTATAAGTGGTAAGCACTGTTACTTTATCACCTTTGTTTTTCCTTCCCTTCGGTCAGGGACTAGAGATGTGCGGTCCTCATCGTCGCTCCTCTGCTGGCACCCTTCGTCGC # Right flank : TGATGGTGAAGGAAAAAAAGTATATAACTGGGTACCAGGGTTTCAATACCGTAAACGGTAAATTTTTTCGCCTTATTAGGTCCTAGAGGGTCTAGAAACCTAGGTAAATACTGGTGGAAAACCTTTTTTCTAAGGATACAGTAATTATAAGGGTTTTCTAAAATTACGTCAATATGAGGGTAGATTTTCCAAGAGGTCTATTTTCCACAAAATACAGGTAATATCTAGGTTTACCTCTATTTTTAGACATTTTAGAGGTCTAGAAAACCTTTTTTATCTTAATTTTATGCAGAAAAAGACCTATCCATATGACATCATACGAATAGGTCTATCGATTCTTATATTCACTTATTACTTTCAAAATTATACCTCAACACATACATGAACTAAACCAAGATCGACTGATGGCAACATATAGAACACCTCCTTTTATCACAAAATTCTAACTAGTCCCGTGTCGCCCGATATATTGTTGATCCTACTGTTACAGTTGTTGAAAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACCGCAAGCGGTAGGTGCTGTTGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 9701-9987 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCR01000003.1 Veillonella tobetsuensis strain PAGU 1579 sequence003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================== ================== 9701 30 100.0 72 .............................. ATTTCAAGAACGAGGGAAGATTTGTTTACATATTTCCCGTTGCAACAGTACCTACCGCNNAGGTAATGAAGT 9803 30 96.7 50 ......A....................... TACTTTTACTACTGTCTCTAACATTTTTAATTTTCCTTTTGGTTAGTTGC 9883 30 100.0 46 .............................. GTAATTTGAATGATGTAGGAGATGTTTGTTTGACCTACTAAGTTGC 9959 29 86.7 0 ......A.C..............-....C. | ========== ====== ====== ====== ============================== ======================================================================== ================== 4 30 95.8 56 AACAGTGCTTACCGCTTGCGGTATTGAAAC # Left flank : TAGCATAGCTATAACAAATTTTGTCATTGTCTTGTTGCAACAGCACCTACCGCTTGCGGTATTGAAACGCATAAGCTTCTAGCATGCCACAAGTATCAGTTGCTTGTTGCAACAGCACCTACCGCTTGCGGTATTGAAACACTCCTACAGCAAATAAAAATCCGATTGGGATTATAACGTTGCAACAGCACCTACCGCTTGCGGTATTGAAACATTTCATCAAATGCTCGATTCAACTCAGACTTGTAAGTTGCAACAGTATCTGCCGCTTGCGGTATGCGACGAAGGGTGCGAGGCAGCAGAGGAGCAAAGTGACGATGAGGCCCGCACATCTCTAGTCCCTGACCGAAGGGAGGGGAAAACAAAGGTAATGAAGTAACAGTACTTACCGCTTGCGGTATGCGACGAAGGGTGCGAGGCAGCAGTGGAGCAAAGCGACGATGAGGTCCGCACATCTCTAGTCCCTGACTGAAAGGAGGGGAAAACAAAGGTGATGAAGT # Right flank : CGAAAGATATAAAACAGTAGAATCATATTTCTTCAACAATTACATATGAGCCTAACAAAAAAGCCACGGCATTGCCGTGGTTTTTTTTGTTCCTAGTTTTTCTGATTACCTTATTTTTCCTAGACCCTCTATAATGAACTCAACCAAAGGCGTTGTGTTAATCGGAGGTGTGTTATGAGTGTTTTTATGTTATTGGTGATACTCGCGTTACTTGTTGATTTTTCAGAATCAAATCGATAGGAGGGTGCTATGGAAAATTTTCGTGAAGAACTAAAAGCAATGTTGTATTTGTCAGGTCGTATGAATCGTCGCTCTTATGTAATGAATTTACTCATGATATTTGGTATAGGCTATCTTGGGGGGATATCAATTTCTTTGGAACGCGTATCCGAATTTTTCTGGGTGCTTGGATGGCTCATCATCGCATATTCTGTGGTTCGAGAGCTGGCAATCGCATCACGGCGTATCCATGATTTGAATGGTCCAACATATCTAGCTTA # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-1.30, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGTGCTTACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 24624-25647 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCR01000003.1 Veillonella tobetsuensis strain PAGU 1579 sequence003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================= ================== 24624 35 100.0 38 ................................... TTCTTGGACGATAGTAATAGCTTCATCGCGAGTGTCAC 24697 35 97.1 43 ...A............................... ACTACATCGCGTCCCTTGAGTGCTCCAAAGTCGAATACGAAGA 24775 35 100.0 39 ................................... CTTCATAGTTCACCTCCTTTCAGTACAACGAACACGGGG 24849 35 100.0 36 ................................... GATCCAATCGTTACTTGTGTCTTGTGAGTGAAGCTC 24920 35 94.3 43 ...................T..A............ TTAGTAACCTCCCATGTTTGATATTGGTAAAAACTGGATTCTA 24998 35 94.3 40 ...................T..A............ TTGAATGTCCCAATGTTTTTCCAGCCATATGGTTGGATGG 25073 34 82.9 89 ...................T..AT.....-.CG.. GAAGGGTGCGAGGCAGCAGAGGAGCGAAGCGACGATGAGGACCGCACATCTCTAGTCCCTGACCGAAGGGAAGGGAAAACAAAGGTGAT 25196 35 88.6 39 .AA.T.....C........................ TGTAAGACTGTTGATGCACAACTGTTATAGACACAAAGA 25270 35 85.7 87 ...................T..A.........CGA AGGGTGCGAGGCAGCAGAGGAGCGAAGCGACGATGAGGTCCGCACATCTCTAGTCCCTGACCAAAGGGAAGGGAAAACAAAGGTGAT G [25298] 25393 35 82.9 38 .AA.T.....C.TC..................... AAACCTCCAAAGTCCTCAACAGAAGATTCAGTTGGCAA 25466 35 97.1 37 .......................T........... TACACGTGTTTCGTACGATTCCCCGGCATGAGGGTTA 25538 35 97.1 41 ...........G....................... TTTTCTAACTCATTGAAACACATGTTATCAATGTTAACTTT 25614 34 85.7 0 ...................T..A.....-..CG.. | ========== ====== ====== ====== =================================== ========================================================================================= ================== 13 35 92.7 48 GTTGCAACAGTACTTACCGCTTGCGGTATTGAAAC # Left flank : AATTGGCCCCTAGTTTTTTTGATTATCGTATTATATGAAAGCTACGTATAATGAAATCACAAGTTAAGCCTACGAGTTAGAGCATCATGTAGCATGGTCGTTACCTCCGCGACCCATATCGTTACAGCGTAACGGTATACAATACACAGACCCTTTGATCGGAACCGCCCTTGTGGCGGATGCCATGGTGCTTTAGCTGGTGGGCTTAATCTATTTCTATTTTGCTATATTAGTTATGAAGTTTGCATAGTAAAGAAGTCTGTTTATTACTGTAATAGAATCTCTTAAAATAAATGAAAGGAAAATGAATTAAATTATTGACGTAAAATTGATAACCCCTTATAATAACTGTATCTTAAGAAAAATCATTTTCTTCCAGTATTTACCTACATCCATAGGCCTTGTGGATCAAATGGGAGCACGTTTTGACCGTTTACGGTGTGAGGTTTTCCAAAACCTATTTTTAAGCCCCATGAATACTGGCTTTGTAAGGCCTGCTG # Right flank : CGAAGGGTGCGAGGCAGCAGAGGAGCGAAGCGACGATGAGGTCCGCACATCTCTAGTCCCTGACTGAAGGGAAGGAAAACGAAAAGGATGGGTGAAAGCATTTACTGCTTGCTGCATTGAAACTTAAAGCCTGGAGGAAATACAATGAAAGACTTAGAAGCGAATCTAAACTTTCTGTACAAACTAATTAACGAGGAGGTTTATTGGCTGGACGCAGACAAGATAACTCCACAAATGATAGAGGAGTTCAAGCCACACTTGAAGGAAGTGATGGAAGTGCAATGCAAGGACCACACTCTCTTGGAGTTAGCGGAAGAGGAGCCTTACTTCGCAAAAGTGAAAATGGCAGAAATAGTGACAACAGCCCAACGCAAAATGTCAGCGGAGAAAGCGGGATACAAACTACCACATCTCAATCGTTATCAAAATTGGGGAACCATTCCAGTTGGGGGATTGAGCTTGGAATTCACTCGGTACACGAAGCCGATGAACAGGGGAAG # Questionable array : NO Score: 7.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:-0.72, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTACTTACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //