Array 1 567726-570200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046041.1 Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 567726 26 100.0 41 .......................... TTTGGTAAAAAATGGCGCACTGTCGGCCTACCTCTGTCTCG 567793 26 100.0 39 .......................... TTGTACCCATTTTAACAAAAAAGAGGTACAAAAGTCTCG 567858 26 100.0 40 .......................... AACTATAATTTAAAAAAAACAAAAAACCGCCCTCGTCTCG 567924 26 100.0 42 .......................... TTGCAACATCTGCAATAGTATCGGATTTAGTGGATTGTCTCG 567992 26 100.0 40 .......................... AGAAAAAAAACGGATAGCTGATAAAAGGGAGAACGTCTCG 568058 26 100.0 40 .......................... TGACTGACATCATCTGTAATCTTGTTTAGTGGAAGTCTCG 568124 26 100.0 39 .......................... ACTTCCTCCTTCTGCAAACGGTCCATCTGTTCCGTCTCG 568189 26 100.0 40 .......................... ATCTTCTGTCTCAATCAGATACCTAGCATGCCGAGTCTCG 568255 26 100.0 40 .......................... GCTGCGGTTTATCAAAATCAATGACAGTTGTCTGGTCTCG 568321 26 100.0 40 .......................... GATAATAATGGCATGGTTTCCTCCTAGAGACTATGTCTCG 568387 26 100.0 40 .......................... CTACAAATCCTAACACTGATAGCATTGCTGCACCGTCTCG 568453 26 100.0 41 .......................... TCCTGCTCTAATTTTGGTGTCTCTCCAACCGGTTTGTCTCG 568520 26 100.0 39 .......................... ACTTTAGGAGCAATTGCAGTCGCAATGATGATTGTCTCG 568585 26 100.0 41 .......................... ACAAAAAAATAAAGCACCAAGTTTTCCTTGGTGCTGTCTCG 568652 26 100.0 40 .......................... TGATTCTCATAGTTACGGGTCTGAATGCGTCCTGGTCTCG 568718 26 100.0 40 .......................... AAGTAAACTCTGAGCTTTCTTCATTTTACTGCTTGTCTCG 568784 26 100.0 40 .......................... TTCTGAAAACGGAGGAAATATTTGATCGTGTTCCGTCTCG 568850 26 100.0 38 .......................... AAGAGTAATAGTAATATGAGACATTTTTATCCGTCTCG 568914 26 100.0 40 .......................... AGGGTTTATCAAACTGTAAAATGTATCTATGACCGTCTCG 568980 26 100.0 40 .......................... TTGGCTCAATCTTTATCAATCCTGAAAAAGTAATGTCTCG 569046 26 100.0 39 .......................... AATCAACATTGTACCAATCAGAAAAGGCTCAGCGTCTCG 569111 26 100.0 40 .......................... TAAAACTGGATTGAGATTTTCCGAGGCACAAGGAGTCTCG 569177 26 100.0 41 .......................... TTTCCAAATAAGGGGACTAGAGAAGATATTTTAAAGTCTCG 569244 26 100.0 41 .......................... AGTATATGGCAGAGGAGAATCCCATTTTTTATAATGTCTCG 569311 26 100.0 39 .......................... TCAATTTTTTTGAAACAATTGGAATAGTCTTTCGTCTCG 569376 26 100.0 41 .......................... ATAATTAACCTCCTAACTGACTAAAAGCCACTTCCGTCTCG 569443 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 569509 26 96.2 42 A......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 569577 26 100.0 41 .......................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG 569644 26 88.5 41 ...TT.G................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 569711 26 88.5 39 ...TT.G................... CTCTAATTTTAATAACTCCTGAGCACCAGTTTGGTCTCG 569776 26 88.5 40 ...TT.G................... TTTATGTTTCTCAATCCAATCCGAAACAAACTGTGTCTCG 569842 26 88.5 40 ...TT.G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 569908 26 88.5 40 ...TT.G................... ATTTATCTTACACATTTATTATATCAAATGCCCTGTCTCG 569974 26 88.5 41 ...TT.G................... CAAATCAAACATTGACGAATAGCCCAACCAACATCGTCTCG 570041 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 570108 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 570174 26 80.8 0 ..TTTC.T.................. | T [570198] ========== ====== ====== ====== ========================== ========================================== ================== 38 26 96.7 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1413789-1413488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046041.1 Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1413788 36 100.0 30 .................................... TTGGAAGACATACCAACGATTTGCTAAACG 1413722 36 100.0 31 .................................... CTCCACTAAATCAAAACCATTATAGTGTAGT 1413655 36 100.0 30 .................................... TCTATTAAGTAGATTGTGTCCTTTTGTGAC 1413589 36 100.0 30 .................................... AGATACTATAAAAGACCAATTAAAAATTAT 1413523 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAGGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATACATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGTTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTATTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //