Array 1 176363-174624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAP010000004.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS22 YZU01354_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176362 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 176301 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 176239 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 176178 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 176117 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 176056 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 175995 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 175934 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 175873 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 175812 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 175751 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 175690 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 175629 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 175568 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 175507 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 175446 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 175385 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 175324 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 175263 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 175202 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 175141 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 175080 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 175019 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 174958 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 174897 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 174836 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 174775 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 174714 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 174653 29 93.1 0 A...........T................ | A [174626] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193824-193003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAP010000004.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS22 YZU01354_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193823 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 193762 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 193701 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 193640 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 193579 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 193518 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 193457 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 193396 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 193335 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 193274 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 193213 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 193152 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 193091 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 193030 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //