Array 1 51-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYP01000201.1 Mycoplasmopsis pullorum strain UBP15-291-5 6_532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 51 38 97.4 28 G..................................... TAAAGGAATTGAAATTCATGACTCTAAA 117 38 100.0 28 ...................................... GAGTTTCATTTGTGGTATGTCGTTTGTG 183 38 97.4 28 .C.................................... CTAAAGCTTTATTAATTAAATAATTAGT 249 38 92.1 28 .........AA.C......................... AAAATTTACAAAAAGAAAACAAAAACAT 315 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ============================ ================== 5 38 97.4 28 TAGTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Left flank : CAATTATTTTGTTAAGTAAAACCGTAACGCGTAAAGTGCTAGGTAATATAG # Right flank : CTTTTTTAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 310-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYP01000216.1 Mycoplasmopsis pullorum strain UBP15-291-5 6_587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 309 37 100.0 29 ..................................... CTTTAATTTTTAAATCTTGGTTAATTAAT 243 37 100.0 29 ..................................... TTAAGGATAATATGACAACAAACCAACCA 177 37 100.0 29 ..................................... TTCACCGGTTCTAAAAATTAAGCAATCAG 111 37 100.0 29 ..................................... AATTCTTGCGTATAAAAATTTAAGAAACT 45 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAACT # Left flank : AGAAAGGTTGTGAAAGTAGATTTTGTCT # Right flank : AAAAAGAGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 42-277 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYP01000280.1 Mycoplasmopsis pullorum strain UBP15-291-5 6_779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 42 38 100.0 28 ...................................... AGTCGCGGCGTAAGTAGTTTAAAGTTAA 108 38 100.0 28 ...................................... ATAATTTTAAAACCGTTATAAGTTTTTA 174 38 94.7 28 AA.................................... CCAATGGTACTAAATTGCATCATAAACG 240 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ============================ ================== 4 38 98.7 28 TTGTTTTACTTAACAAAATAATTGTACAACCCCAAAAC # Left flank : ACAACCCCAAAACAAGACAAAATCTACTTTCACAACCTTTCT # Right flank : CGCATT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTTTTACTTAACAAAATAATTGTACAACCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //