Array 1 123859-121676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYW01000124.1 Acinetobacter baumannii strain CU032113 PROKKA_contig000125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 123858 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 123798 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 123738 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 123678 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 123618 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 123558 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 123498 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 123438 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 123378 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 123318 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 123258 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 123198 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 123138 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 123078 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 123018 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 122958 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 122898 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 122838 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 122778 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 122718 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 122658 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 122598 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 122538 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 122478 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 122418 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 122358 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 122298 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 122238 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 122178 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 122118 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 122058 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 121998 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 121938 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 121878 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 121823 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 121763 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 121702 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128949-131438 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYW01000124.1 Acinetobacter baumannii strain CU032113 PROKKA_contig000125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 128949 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 129009 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 129069 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 129129 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 129189 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 129249 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 129309 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 129369 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 129429 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 129489 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 129549 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 129609 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 129669 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 129729 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 129789 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 129849 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 129909 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 129969 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 130029 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 130091 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 130151 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 130211 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 130271 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 130331 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 130391 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 130451 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 130511 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 130571 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 130631 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 130691 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 130751 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 130811 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 130871 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 130931 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 130991 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 131051 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 131111 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 131171 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 131231 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 131291 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 131351 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 131411 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 42 28 98.4 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //