Array 1 161581-160962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJY01000030.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48578 N48578_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 161580 27 93.1 32 --........................... ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161521 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161418 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161357 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161296 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161235 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161174 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161113 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161052 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160991 29 96.6 0 A............................ | A [160964] ========== ====== ====== ====== ============================= ========================================================================== ================== 10 29 98.6 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106396-107521 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJY01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48578 N48578_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106396 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 106457 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 106518 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 106579 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 106640 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106701 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 106762 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 106823 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 106884 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 106945 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 107006 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 107067 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 107128 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 107189 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 107250 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 107311 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 107372 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 107433 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 107494 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123779-124725 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJY01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N48578 N48578_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 123779 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 123840 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 123901 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 123962 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 124029 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 124090 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 124151 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 124212 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 124273 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 124334 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 124395 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 124456 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 124517 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 124578 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 124639 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 124700 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //