Array 1 458-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXND01000080.1 Pediococcus parvulus strain 2.6 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 457 36 100.0 30 .................................... TACAGTGCCAGCCAGTGAATTGTAGCTAGT 391 36 100.0 30 .................................... AACTAGCATTGCTTGCAAGGTCTGTTGCGA 325 36 100.0 30 .................................... TCAACTCGCCAATGTTAGTTGCCGGTGCCA 259 36 100.0 30 .................................... CGAAGGTCTGTTTTTTATTGCTTAATTACT 193 36 100.0 30 .................................... TTAATTCGAGTTGTTTATTGCGGGCATCTA 127 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : CGACCGTCCCCAGATTGATCAATTCATCGGTGCTGCTTATGGCGAACTGTCGCAATCCGCTAAATATGGAATTGGTGGTAACTACAACGTAGAGATTGTGAACAATTTTGTGAAAGATGCCGATACGTTTACGTTGCTTTTGCCGGCGATGGAAAAATAAAGTGACCATAATGAAAAGCGCCCTTCAAATATAAGGGCGCTCTTTTCATATATTGATTTTGGCACTCTTAAGAATACGTTTTTTGCACAATTAAAAGTTCATAAATCTCTTATCTAGATCGATTCGACAATAAAAGTCCTGCAAGCACTACAGTCAATATGTTTGACAACACTTGCAAACCACTGTTTGAGTTTCCTGAAACGTTCAAAATTAAGGAGACGATAGCCACCAGTATTGTAATTACGGCTAACCATTTAATTTTTTTACTCATAGCTCTTTCCCTCCTTTTATTAGTCACTTGTAAAACAAGTATTCATTAATAGTAATAGTTGCTTCCTTT # Right flank : CCGAGAATGGTGCAGATGTTCAAGCAACTGAGCTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11416-14491 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXND01000024.1 Pediococcus parvulus strain 2.6 contig16, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11416 36 100.0 30 .................................... TGGCTTTAATCTTTTCGATCTGGGCTTTAC 11482 36 100.0 30 .................................... TGACGGCGTAGTCAAATTCATTCGTCATGC 11548 36 100.0 31 .................................... AAAATACTATTTGGAATTGCAAGAGTTCCTT 11615 36 100.0 30 .................................... CTTAGTAAAGCGGGGTATTATAAATGGCTA 11681 36 100.0 30 .................................... GAGAGTTACTCTATAAAAAAGTAAAAGACC 11747 36 100.0 30 .................................... TAGAAGGCGATTTAGTTGAGTAAAGATCAA 11813 36 100.0 30 .................................... TAAGCTCCAGTGCATGCGTCTCACTTCCCG 11879 36 100.0 30 .................................... TAGCTTAGTCTTCTTTCTTTAACTTCTTCG 11945 36 100.0 30 .................................... AGTGTTTTTTGTAAGAAGTCAATATTTTTT 12011 36 100.0 30 .................................... TTACTGGTCATGTTTTTGCTACAGATGACA 12077 36 100.0 30 .................................... ACCTCAAAAACCAAATGGAATTTATGGCGA 12143 36 100.0 30 .................................... GCGTAGAAACTGGGTTGAGCATTAGTGGCA 12209 36 100.0 30 .................................... TGTGTTTTGCCACTTCCGACCTGTCCAAGC 12275 36 100.0 31 .................................... TCGTTCATCTCGATCAGATTGTAAAAATCAA 12342 36 100.0 30 .................................... TCGGATGATTGAAATCGCGAATCGTCGCAT 12408 36 100.0 30 .................................... GGTCTATGCAGGGGTATGCCGATACTGTGA 12474 36 100.0 30 .................................... CGACTACTGATACGATTGACCGAGACACAC 12540 36 100.0 30 .................................... CAACTGATGTAAATGGTGCGATAACGGCTA 12606 36 100.0 31 .................................... AGCGCTAAAACCATTTGCCTTCAAAGCTTTG 12673 36 100.0 30 .................................... GAACGATCATTGAATCGACCAAAGTGCCAT 12739 36 100.0 30 .................................... ACTTTACCGTATTTGTTCCTGGTGCTAATA 12805 36 100.0 30 .................................... GAACCCAGCTTGTCAATTGACGAGGCAAGT 12871 36 100.0 30 .................................... GCATTCTCGGTTTTAAGTGGCTTGAAATAG 12937 36 100.0 30 .................................... CAATCACGTTAGTTGACCGGTCAAACGCCA 13003 36 100.0 30 .................................... AAAAGACCGTGAATAAGTATATAACAACCG 13069 36 100.0 30 .................................... ATGCTGGTGGTGCGCTGCTGTCAACGTCTG 13135 36 100.0 30 .................................... GATCATCCAAGCGGTCTACCGAGCCTTCAA 13201 36 100.0 30 .................................... GAAGTGGCTGTTTTAAGTGCCGTTGCTCGT 13267 36 100.0 30 .................................... TACACGCCACCTGTACGCAGAAGAGATTGT 13333 36 100.0 30 .................................... ATACTGAGTCTTGCTGTAGCCAATATCCAT 13399 36 100.0 30 .................................... CCTTAAGCAACAGTTATAACGCTGGCATTG 13465 36 100.0 31 .................................... TAATCTAGTGACAGCGGTACAGGCAGAGCAA 13532 36 100.0 30 .................................... CACCACATGAAATAATTTCAACAACTCGAA 13598 36 100.0 30 .................................... GATTTAAGATAGCCGCTAGCATTGCCCAAT 13664 36 100.0 30 .................................... ACGGGAAAACGACTTACGGCACATCCACAC 13730 36 100.0 30 .................................... GCTTTTTTAAATGTCTTAGTTATTTTTGTT 13796 36 100.0 30 .................................... TTGGCTAACAATGCTAACTTGTGAGCAGCC 13862 36 100.0 30 .................................... ACAAGCGGAGTATTACCGGATTAATGGCAC 13928 36 100.0 30 .................................... TTAGCCGTTGTTTTAGCTGGTGGTGTTAAG 13994 36 100.0 30 .................................... ACATGCCAAAGACAAGAAGATGCCGCTATC 14060 36 100.0 30 .................................... CTGGTATTGTAGATAACTCGAAGGAAGTAT 14126 36 100.0 30 .................................... ACAATCATTGGCCCTGTCCAACCACTGTAG 14192 36 100.0 30 .................................... ATGTGCCCGAGTATCGTTTCTCTTTACGAG 14258 36 100.0 30 .................................... TTTTGGTGATCTCCTTATCTAGTCAGATAA 14324 36 100.0 30 .................................... TTGCATCATTAGAAGAATCGCGCAGTTGAT 14390 36 100.0 30 .................................... ACGGCTATTACTGGTTATTTGCGGTAGAAA 14456 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 47 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : ACGTAGACTTAAATAAGATGTACCAAAGCCAATTGCAAAAGCAAATCGTGTCAAAATTGGATGATGCTTCTAGGCAAAAACTAACTGAAATCAATAGTCAATTAAAATCACTAATTTTTGATGCAACATTTTCATTAGATTTACCTCTTAAGGTTAACGACGAATTTGATCCGATTAAGTTGGTAAAGTACTGTGAAGTTAGCTTTGTAAGTGCTTTAAAGCAAGATCCATATGGTATAATTGAAACGGTGTTAAAAACTGCTTCTGAATTAAAGGAAACCAAAGTACTTGTCTTGACTAGTGTGAAAAATTATCTCAGTGTCAGCCAATTTGATGAATTGGTGAGTTTAATTAAGTCACTTGATTTGAATATCCTATTTATTCAATTCTCAGAAATGGATAATCATGAAGAATTTGATAAATGCCGTTATTACTACGTTGATCAGGATTTTGTTGATTGGCGGTACTAGATACTATGAGAATAGCATTATAAAAAAACG # Right flank : TGGATGTAAGCTGATTCCTGAGACAACTTTTAAGAGAGCGTATAATGAATAAATCGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //