Array 1 2196684-2196536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069437.1 Moraxella osloensis strain FDAARGOS_1202 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2196683 28 100.0 32 ............................ CAACACGCAAAGAGCAAAAAACCAAGGTCGAA 2196623 28 100.0 32 ............................ AACATCATCGATCAAAGTGCGTCGATAAATGA 2196563 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGCTGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTGACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : CATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAAGATTTCTCATTTTTATATGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTAGTATGTGGATTTAGAGTCGTACCGTGAAAACTCAAAACTTTATATAGTCCGTATAACAGCTTTTGTATCTATTTTTCCAATCTCAAGACGGTTAACTAAACTAGTGTGTCAATGTCTTAAAGTTTCTAATAGCCATGTTTTTAATTTGGAGGGAATAACTTTGAAAGGATTTTTTTTAGGACATGAAGACTATTTAAAATAAGCAATGAAACTCGAAAAAAAATAATTCAGTTTCATCTCTTTTAAATTTGAGTGGGGGTCAAAATCTACTTGCTCAAAAATTAACCAAGGCACAATTTGGGCACAATTTGGGCACACAAGATTTTTAAGCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2300061-2299424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069437.1 Moraxella osloensis strain FDAARGOS_1202 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 2300060 28 100.0 32 ............................ CTAAATGAACCGTATTGATAAACTTTCGTGAC 2300000 28 100.0 32 ............................ AGATACGCCTTTTGACCCAACTAGCATAATAG 2299940 28 100.0 32 ............................ AATTGCACTTGTAAAGACACCCAAGCCCATGC 2299880 28 100.0 32 ............................ ATTCTCTAAAATCGTGATACGCCATTGAATCG 2299820 28 100.0 32 ............................ GATATAATTGATGCGATTGGCAAAGTCTTTGA 2299760 28 100.0 32 ............................ ACAATCAATCAAGCATTATGTGATAGAATGTT 2299700 28 100.0 41 ............................ TATTTTTGATTTTAACGTCAAAGACGTCAAAGATAGGCAAA 2299631 28 100.0 32 ............................ TGAAAACTTTAAACTGGTATGTGCTAAAAATG 2299571 28 100.0 32 ............................ GTATGTGTCTGCTTATTTGCCAAACCCAAGCC 2299511 28 100.0 32 ............................ TCTCGACTGATGATTCCCAGTGCTTTAAGAGC 2299451 28 78.6 0 C............T........G..TCT | ========== ====== ====== ====== ============================ ========================================= ================== 11 28 98.1 33 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TACCTTGTTCTTGATACAAATCTATCCAACTGTCTAGGGTATTGCGACAGATACCAAAGGTACGAGCGGTTTTACTTTTGTTGTTCGTTTCTTGCCAGTAGGCGATGGTGCGCTTTCTTAGGTCTTGGTCGTATAGGTTCGGCATGGCACTATCTATGAAAATTTAAATTGTGTTCATTATAATATAGGTTTAACTATAGATAAACACCCTACTACTACAAGTTATGAGATTAAATTTTTCTAAACGTCACTACTTGTCGTTTTACTATAAATACCCTATTGCATTCATGAACATGGTTTGACAGACTAAAGAAAAATCAACTTATGTCATCTCTATCATGTCAAACGCCAATCCCTATACCGACAATAGCTTTACGTCTTCTGACTTAAAGACCATCCTGCACTCCAAACGTGCCAATATTTACTACCTACAATACTGCCGCGTCATGCAAAAAGCGGCTTAGAAAAAAAATATCTATACAATAAATAAGCTGGAAACA # Right flank : TAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAATAAGTGGGTGTGAAATTAAAATTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATCCTCGAAAAACCACGTAAACCTTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGACTAGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAAGTCGCTAGACCAATCTACCCTATTTGATATTAATGTACTTTAATACTCAAAGCTTTGATACGAGTGGGTTTCAAGTAGGTGTTTCAAAATAACATTAATGCGATTTAATGACAATTAAAAAATCATTTTGTAGTTTGGTCACGCAATATTGCGTGTTTTTTACCCCCACTCTTCTGATGTTTTTGATGGATAAGGCTGAAATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2312039-2301376 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069437.1 Moraxella osloensis strain FDAARGOS_1202 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2312038 33 100.0 32 ................................. AACCTCTCTTTGCTAAAACCAACTGAAAGCTC 2311973 33 97.0 31 ................................T TTACGAATGATTTTTGATACTTGGGCTTTTG 2311909 33 97.0 32 ................................G ACAAGCTAGGCGACCCCGAGCAAGAAGGCAAA 2311844 33 100.0 32 ................................. GATTGCCTATTATCGAATGGAGTGCGCAGGCA 2311779 33 100.0 33 ................................. ATTTTGTTGTCATCGCTTGGTGGCTGTAATCGG 2311713 33 100.0 32 ................................. TCACGCCCACCAATAATAGGCGGATAACCTGG 2311648 33 100.0 33 ................................. TAGCGGTTCTCACAATTAAATTACTTTCATTAT 2311582 33 97.0 34 ................................G CTGTACCACCACCCAACCGACCACCAAAATCGCG 2311515 33 97.0 33 ................................T GGGGTCGCTTTACCCATGCGCCCAGACTTGACC 2311449 33 100.0 33 ................................. GCAAATCTACACTCATTTTATCTCTCTTTGGCA 2311383 33 97.0 31 ................................T ACAGCTTGTAGGGCAGCAGTCGCCTGTACCT 2311319 33 100.0 33 ................................. GTGATTCGGGCTGGGGTTGGTGGATAGTAGGGT 2311253 33 97.0 32 ................................C GCTCGGTGGGTCGTGACTTGAGTTTTGACCGT 2311188 33 97.0 32 ................................T TTACAAAGACCAGACCAGTTTAAACCAAAGAA 2311123 33 100.0 33 ................................. ACGGCTTCAGACGTGCTCATTTGTTCAAGCTGC 2311057 33 97.0 32 ................................T CTTTTTCAACCTTTGCTTTGTTTTTAACCGAG 2310992 33 100.0 36 ................................. ATTCAAGCATATGAATATGTGTTGGTTGGTCTTGAG 2310923 33 100.0 32 ................................. TACGCTCACCAAGCACCTTATGAAGAATTGGC 2310858 33 97.0 33 ................................T AAGTTATCCATTTGTAACTCCACTTGTTTTTGC 2310792 33 97.0 33 ................................C TTTGGTATATCGCTAATTTGCGATAAATTGTTA 2310726 33 100.0 34 ................................. ATTTGTTGTCTTGGCATAAATCTGCCCCTTAAAA 2310659 33 97.0 31 ................................T AAAATTAATCATTTGTTTTCCTTGCTTGCTT 2310595 33 97.0 32 ................................C AACCGAGCGGCTAGTATTTAACCCAGTGCAAA 2310530 33 97.0 32 ................................C GCAACGGTTGCCAAGGCAAAAACCGCCATTGA 2310465 33 97.0 32 ................................C TCAAGGGGTATTGTTATTGCCCCGCTAATTAA 2310400 33 97.0 32 ................................T AATGCTGCTTGGCTTTGGTTGCCCCAAGCCCC 2310335 33 97.0 31 ................................C GACCTTTGCCATCGTTCCACATTTCTATATG 2310271 33 97.0 32 ................................G ATTTCGCCAGCTAAAACAATGGGTGTTTTAGC 2310206 33 100.0 32 ................................. ATACAATACATATATTTGCTTGAATACCCCAT 2310141 33 97.0 31 ................................T TTGTACGCAACCAAGAAATTAAAGAACTTGC 2310077 33 100.0 31 ................................. CCCATTGACATGCCAAGTCCAGCCGCCGCCG 2310013 33 100.0 33 ................................. CGGCATTACACGGCGATACGGGGCAAATATCTT 2309947 33 100.0 33 ................................. TGGAGTATGTGAGACATGATAATCAGACCTTTT 2309881 33 97.0 31 ................................G GGGACGTATCACCCCATAGTGTATCGCCAAA 2309817 33 97.0 33 ................................T CGCTACAATGTTAATATTGCTGTTATTCAAGGT 2309751 33 100.0 32 ................................. GATTTGCTTTAATTGCGTATTCGGTCATAGCA 2309686 33 100.0 32 ................................. GAATGTAAAACCAATCATGACCGAGATATCAA 2309621 33 97.0 32 ................................T TCTAACTCGATTAATAATGTATCTACCGTGAC 2309556 33 100.0 32 ................................. GAGCAAGCGGCTGCACCAGTATTTGATGAGGT 2309491 33 100.0 31 ................................. CATCAACAGCTGAACATAGTATATATAAACA 2309427 33 100.0 31 ................................. GTACCAGCCGTGACTTTATCACCAACGCCAG 2309363 33 100.0 33 ................................. TTGTTAAAGAGCAAAACCAAACAGGGCGTAACT 2309297 33 97.0 33 ................................G TGCCGTTGCCGCCACCAAAAAAATCCAGTCCTT 2309231 33 100.0 31 ................................. CTAGCATTGAGTTTTATCCGAAATTTGCTGA 2309167 33 97.0 33 ................................C CAGCTAATGGCTTACTAATTACCAGCTACGACA 2309101 33 100.0 33 ................................. TTATTGCCGCGTGTGATGCCTTGGCCTATGGTG 2309035 33 97.0 32 ................................T GCAACATTCAATATCGCCGCTTATTGCGTAAA 2308970 33 97.0 33 ................................T CGCTATCAAACCAACAGTTTTTAAGCATTTGGC 2308904 33 100.0 32 ................................. AAGCCTGTGCCGATAAATGGCTGCACCCCATG 2308839 33 97.0 32 ................................G TATTTGTCAAAGTCATCATTCATCATCGCCTC 2308774 33 100.0 32 ................................. TCTGCGCGGTGTGTTTATGACGCCTGAAACAA 2308709 33 97.0 32 ................................T GAGTATTTAACTGATGGCAAAGAAATGATTAA 2308644 33 100.0 33 ................................. GTTTTTTTTGTTTCAAATTGCTGTTTAAGCCAA 2308578 33 100.0 33 ................................. CTGGCTGGCTAGAATTTTGACATTTTAGCAAAG 2308512 33 100.0 32 ................................. ATTGATGGTCTGGGCGCTTGATACCCATGAAT 2308447 33 100.0 33 ................................. AGAGCAGTCAAGCGATCAAGCATATCCTGATGG 2308381 33 97.0 32 ................................G GTGAGCCAATCTCAAACTATCACCGACTTTCC 2308316 33 100.0 32 ................................. TTGATGGTCTGGGCGCTTGATACCCATGAATT 2308251 33 97.0 34 ................................C ATCGATATCAGTAGGCGCAGGCGGCGCATCACTG 2308184 33 97.0 32 ................................T TTAAACTCAATAGGATAAAAAGGCATAGCGAC 2308119 33 100.0 32 ................................. AAAATTTTCACCCATATCAAAACAAAAGGTGA 2308054 33 97.0 32 ................................G GCACTGGCTGACAAGGCATGGAATACATAACT 2307989 33 97.0 33 ................................G ATGATAAGCTGCTCATCCTCGCTACTAAATCCC 2307923 33 97.0 33 ................................T CCGCCCTCTCGACATAAGCATTATACACAATTC 2307857 33 97.0 31 ................................C AAAATATGCTGGCGGCTGATGGCTCGACCGT 2307793 33 97.0 32 ................................T GGCAAAAGCAATAGAAGTCACCAACGACCACG 2307728 33 97.0 32 ................................T CAACGAAGCTGCCGCATTAATGTCCGATAACT 2307663 33 100.0 31 ................................. AAACGTTCACAAGAAACGGGTCATAGCGATG 2307599 33 100.0 32 ................................. ATTTGTTTTGATTTAGTGTCGATAATCATATT 2307534 33 97.0 33 ................................T CCTTTTAGGTTGGGTTTAGGAATTGAGCCTATG 2307468 33 97.0 32 ................................C ATCAATTCGGCATGATGGGCGGATGCATGCAA 2307403 33 97.0 32 ................................G GCTTAGTTAGTCATCGCTAGATTCATGCGCTT 2307338 33 100.0 33 ................................. TGCACTTAACTCCACTGCCTGCTCAAAATTTAG 2307272 33 100.0 32 ................................. TTTTAGCCATGATATTTATCCTTTTATCTACT 2307207 33 97.0 31 ................................T ACAAAAAGGCGTCGCGGGATGGGGCGAGAAA 2307143 33 97.0 31 ................................C TACCGAAGTTATGTATGACGAAATTGAAATT 2307079 33 97.0 32 ................................T CGATTATCGGTTTGAGCAATTACGGTTTTCAA 2307014 33 100.0 33 ................................. CTTATTACGCTAGCGAGATTGATAAAAACGCTA 2306948 33 100.0 32 ................................. AGCACTGCATCTAGCTGATTGAAGGTTGCCTC 2306883 33 100.0 31 ................................. TTTCGATAGCTTGCTGTGTCCGCTGGCTATC 2306819 33 100.0 32 ................................. ATCAAAACTAAGTAACGGAGTAATTCTACTAT 2306754 33 100.0 32 ................................. CGCGCCCAAGTGAAATACTTGAAATGAAAATA 2306689 33 100.0 31 ................................. AAACGGCGCATCTTTGAATTTATCATCTAAA 2306625 33 100.0 31 ................................. TGTAACGCTTAACCGCATTTGGCAAGCCTTT 2306561 33 100.0 33 ................................. ATGCCTTGCTCGTTGGTTTTTACCACCAATCCG 2306495 33 100.0 31 ................................. ATGGCGAGCAATACAAGTTACACACCTGACT 2306431 33 100.0 33 ................................. AGTGATGCCGCTAAATCCCACCCACGGCAACAT 2306365 33 100.0 32 ................................. CTGAGTATCTTAACGATATATACGCCTTTAGC 2306300 33 100.0 31 ................................. ATGGCGAGCAATACAAGTTACACACCTGACT 2306236 33 100.0 31 ................................. TAAAAACACTAAAACTACTCAAACAGGTGAA 2306172 33 97.0 31 ................................C AAACGCTCACCATATTGATTGTAAGCAAAAC 2306108 33 100.0 31 ................................. ATGAATCGCAGTATTTTTATTATCTTGACGT 2306044 33 100.0 33 ................................. TCAAGCATCTTTTTAACCTGGCTTACTACATAG 2305978 33 100.0 31 ................................. TGCGTTAAATATTCAAACATAAGTGACCTAC 2305914 33 97.0 33 ................................C CGTCGTTTTTACGCCACTCTACTAAATACCCTG 2305848 33 100.0 33 ................................. GACACACAACCTTATGAAATCATTGAAATGGTG 2305782 33 97.0 34 ................................T CACCGCGCTCTACTGTGTACCTATCAACTTGGCA 2305715 33 100.0 33 ................................. TCGACAGGCGATTGGCCACCGAAATAAAGGTGC 2305649 33 97.0 31 ................................G AATAACAAGTCTTGGCTCTATCAAGTTTTGG 2305585 33 100.0 32 ................................. TCTGCTTTGTGCGGGTCATCAATAATGATTGC 2305520 33 97.0 32 ................................C TCACGTTACTATCAAGGCTTCACCCGCTAAAA 2305455 33 100.0 33 ................................. TCAAAATTGTTACCTAAAGAAAGAGTGCGGTTT 2305389 33 100.0 32 ................................. TAACGCCGACTTGCTGATTCGCCATAGCAGTC 2305324 33 97.0 31 ................................T CTAAGGTCATCACCACGCAACCAAGCTTTAT 2305260 33 97.0 32 ................................T CTTAATGCTTTACTACACAATACCAACTCTAA 2305195 33 97.0 33 ................................G CCCTTAAACGGGGCTGTATGCGCTAAAACACCC 2305129 33 97.0 32 ................................T ATGATTTGCGCCATACTTATGCTAGTTGGCTT 2305064 33 97.0 34 ................................T AGTTGGGTAGCGGTAACGGATAAAGTGGCTAGTG 2304997 33 97.0 32 ................................T CGAATAAAGAAGGACTTAAACGCCCAGCAGGT 2304932 33 97.0 31 ................................T GCTCCTGCTTCAACTCCTTTACCTAGTCTTT 2304868 33 97.0 34 ................................C TATTGTTTGCATACAAATAAGACAAACTGCAACA 2304801 33 97.0 32 ................................T GGAAGCAATGCGACCAATGTTGCTACCACCGT 2304736 33 100.0 33 ................................. CTGCTATCGTTTTTGAGCAACAGATTGTAGGCT 2304670 33 100.0 31 ................................. AACTTTGAGAAGTTGCTGCGGACAACTTCAG 2304606 33 100.0 33 ................................. CTTGCTCAGCGCCAAAACCAACACCGCGTTGGC 2304540 33 100.0 32 ................................. ATAAAGCCCAAGTTACAGAAATCAGATTGCTT 2304475 33 100.0 31 ................................. CGAGCGAGCTGCTGAATCCGCTTTTGTGAGC 2304411 33 100.0 31 ................................. TACGAACATAAGCATTTTGTCTAGTAGTCTC 2304347 33 97.0 32 ................................G CTTGAGTAAAGGTGTACACAGGGTCAGAAGGC 2304282 33 97.0 32 ................................C CGACCCTTCCGACACCGCTATACTCGAAATGA 2304217 33 97.0 31 ................................G GAGGGGTATTATGACGGGAAAACGATATTTT 2304153 33 100.0 32 ................................. TTTTCATTTTTCTAATCCTTATAACGATAAAG 2304088 33 97.0 32 ................................T TGGGTTTGTGCTGTTGCGATTACTTCTGCTGT 2304023 33 100.0 31 ................................. TTGGTAGGTTTACTGATAGGTTTGGGTGCAG 2303959 33 97.0 33 ................................T ACAAAGATGGCAAATATTATTACTATCACGGCA 2303893 33 97.0 33 ................................T TTACCATAAATAGATGAAGCTCTAGCAATATTA 2303827 33 100.0 32 ................................. ACTACTGGAAATCAACTGAAGCGCACATTTTG 2303762 33 100.0 33 ................................. CGAGCTACACGATGACCTCCTTTTAGTAATTCG 2303696 33 97.0 33 ................................G CGGTAAAACGTAATGACTAGACCCGCTAACCGT 2303630 33 97.0 32 ................................T TTGATATGCAGTCCCCAAGTCGAGTCGATATA 2303565 33 97.0 32 ................................T ATTAGACCAAAAATACAACAATTTAGATAGTA 2303500 33 97.0 33 ................................G TATTGCTTGATAATCGCTTTTCCTTTGTTACTT 2303434 33 100.0 32 ................................. TATGATTAAGTATGACAATTATGATAAGCGTG 2303369 33 97.0 33 ................................C CTTCGGCTGTTGAAACTCTGCTGGTTAATGAGG 2303303 33 97.0 32 ................................C TACCAATTTAAAAAATGAGTTGTCTGAGTTTC 2303238 33 97.0 33 ................................C GATGCTGCAACATCATCATGTAAAAATTATAAA 2303172 33 97.0 32 ................................T CAAAATTGCTATCTATATCTAGCTGATAGCAG 2303107 33 97.0 31 ................................C AACCAACGCGACATAAAAGTACATTCCCATC 2303043 33 97.0 32 ................................C CGAACGAAGGCGGATAAGGTCGAGGGGTGAAC 2302978 33 100.0 31 ................................. AATTATACTACCTCAATATAAAACTAATACC 2302914 33 97.0 32 ................................G AATCCAACTTGATCACCCAACTTATCTACCAC 2302849 33 97.0 32 ................................C AATCGTGGTTACGACAATCGCATGGATGTCCG 2302784 33 97.0 33 ................................T TTTCGGAATGCGATTAAATTGGGGATTTTCAGC 2302718 33 97.0 33 ................................C TTGTTATTAGTATCAAGCGAAGCGGGAACGATT 2302652 33 97.0 33 ................................C TGCAATAATAACCGCTATTTCAGGTGCGATGAC 2302586 33 100.0 34 ................................. ATATGACGCTCGCACTTTTTCAAATATCGCTAAA 2302519 33 100.0 31 ................................. TCACGCCATTGCTATACATCGGCTCAATAAT 2302455 33 100.0 32 ................................. TAACAGTGAGCATGGCATTGGGATCACGGTTT 2302390 33 100.0 32 ................................. ACATCAGGATTTAGCGAGATATTTTTTTTAGT 2302325 33 97.0 33 ................................C TGCAATAATAACCGCTATTTCAGGTGCGATGAC 2302259 33 100.0 32 ................................. CAAGTAAACATTCTGTGACCATCGGTAGACGA 2302194 33 100.0 34 ................................. ATATGACGCTCGCACTTTTTCAAATATCGCTAAA 2302127 33 97.0 31 ................................G CTGCGCTTTGTACTTAGCTATCAAAGAGTCT 2302063 33 97.0 33 ................................T AATTTTTATGAACACGGCAAAAGCAGAGGTAAA 2301997 33 97.0 34 ................................C TATCGTGTACGATGGGGTGTTTGTGCCAGTGTCA 2301930 33 100.0 32 ................................. ATACATCATGGCTAATGAGTTTATGCGAGAGA 2301865 33 97.0 35 ................................T TTAAAGAGTTGTAGGTCAAAGCTCTCCATATTCTT 2301797 33 100.0 31 ................................. TGTTCGTGCCTGCTCTAAATAATCACGTTTT 2301733 33 97.0 32 ................................T AAATACTGCTCTGCTTGCGATATCAAGATAGA 2301668 33 97.0 31 ................................C AACACCCAACCAAAAGGAAAAAATCATGGCG 2301604 33 100.0 31 ................................. AGCAATTTGTCGGTAGTCAATTTACCGTCTT 2301540 33 97.0 33 ................................G AATTACCTGCATTTTGTAGTTGGGCTAGTAAAG 2301474 33 93.9 33 ...........................T....T ATCAGCACTTTTATATTCAACCTCTACCCTTGT 2301408 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ==================================== ================== 164 33 98.4 32 GTCGCACCCCACACGGGTGCGTGGATTGAAACA # Left flank : TGCGCCAGGTTGCTCGCCAATGCCGAAATTATGGGCAACGGGTACAATATTCGGTGTTTGAAATCGAAGTTGACCCCGCCCAATGGACGATGTTAAAAGCCAAATTAGAAGGTATTATCAACCCTGAAACGGACAGTTTACGTTATTATTATCTTGGCAAAAACTGGCAACATAAAGTTGAGCATATCGGCGCAAAACCTGCGTTAGATTTAAACGATGTGTTGTTGTTTTAGCAAAATTTTGGTGGTATAAAGATAGATTGTTATAAGGTTATCTTAGGTGAAAAGCAAGAACATCGGGCAAAAGTGCGTGCGAACCGTAAGCTCTCATGTTTTTGCTGGAACATTCGCAGAATTAAATAACAACATGATTTTAAATGAAAATTTCCCTCACGGTAAAAATTCGGTTAGGTTAATCCTAGCCAAATTTCGCTTGTCTTTTAATGATTCGCAAAAACAGCGGTTTTTTAATTGTAATATGAATCAGTTACAAGATAGGCT # Right flank : AGTCAGATTTATTTAGGGCTAGTCTCTTAATATAGTAAATCCTAAATTAAACTGAACAATGAATAACACAGTCATTGAGTGACTCAAACTGACTCATAGACAGTTGCACATTTTGCTTCACTACCGCCCACTTATTCTCTACAGGATTTAACTCAGGGGAATATGGCGGTAAGTATAACAAGGTTAAATTATATTGTTTAGCAATCTGATTTAAATTGCCACCCCGATGAAACCTTGCATTATCCATGATTAAAAAACGCTGTGGGTAGCTGTCGAGTTCATGTTTAGGCAAAGATTGACCAAGCGTGTGAAGCCAATTTTCTACCGTATCACGCTTACACCCACCTTCAAAGGTCACAGGTGCAATCAGTTTAAATTCAGCCATACTCATTGCACCAATTAGATTTAACCGTTTACCTTTGTTGGCCTCAATTTTAGCATAGCAGGGTTTGCCAACAGGTGACCAACTACGCTGATAACTTTGTCTTTGGTAAAAGCCT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //