Array 1 251482-251058 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCI01000046.1 Clostridium neonatale strain LCDC 99A006 Cneo_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 251481 30 96.7 34 ............T................. AAAACTCGTAAATTTCTATTTGCTTTCTACTATC 251417 30 100.0 36 .............................. ACTTTTGCATTAGTTTGGGAAATATCAAAAACATAT 251351 30 100.0 36 .............................. TCTATAAGACCACTTTCAAAATCATGTGAGCGTTTC 251285 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 251219 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 251153 30 96.7 36 ...............T.............. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 251087 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.8 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCACATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGATCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCTGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCCAAAAACCAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 99521-98577 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCI01000013.1 Clostridium neonatale strain LCDC 99A006 Cneo_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 99520 30 100.0 36 .............................. TAAGTATTGGTATCCAGTTCAATATAAAAGATGGCA 99454 30 100.0 35 .............................. TCAAAAAATTCAGGAATTTCACAAACTACACTGTG 99389 30 100.0 34 .............................. ATTTACAGTGAACTGTAATGCATCAGTTACTACT 99325 30 100.0 36 .............................. TTCATATTTTTGCAGATGAATTTGCTAATATAGGCA 99259 30 100.0 35 .............................. CCTTAAACCCTCCTAACTATTAACTAATGCTAAAC 99194 30 100.0 35 .............................. GGGACTTTTGCGATAGGTTGTTTACTAATAAGGTT 99129 30 100.0 36 .............................. GAGTGTTCTTCAAAAGTATATAGATATAGCTTTCGC 99063 30 100.0 36 .............................. TATGGGAAAATGTAAAAAATGTTTTATCTAAGCACA 98997 30 100.0 36 .............................. CAATAGAAAAATAGTTTACAAAGATATTTCTTACGC 98931 30 100.0 36 .............................. TTAGCTCTATCAAACATTTCAAAAGCCATTAGGTAC 98865 30 100.0 34 .............................. ACAATGACTTTCAAGGAGCCATAAATTTTAAAAA 98801 30 100.0 36 .............................. AAGGGTGGTCGCTCGGTTTAGATGGAACGCACTTAC 98735 30 100.0 36 .............................. CAACCTCTTCCTTGTTATTATAATACCTATTATTTA 98669 30 100.0 33 .............................. AGGATTAACAATTCTCTTAAGTGGAGCATCTGT 98606 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 15 30 100.0 35 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAGCAGTCCAGTAAGCCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGATGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATCTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAGCCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATTACCTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTCCACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCGTTGCTATTTAAATAATATCCTTCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 125578-127243 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCI01000013.1 Clostridium neonatale strain LCDC 99A006 Cneo_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 125578 30 100.0 35 .............................. CAATCAAAATATTCCTTAAACTCTCTTTGAACTTT 125643 30 100.0 35 .............................. CTCAATGTTGATTGAGATAAGTTTGCTTCTTTGCA 125708 30 100.0 37 .............................. AATGATTCATGCTCCACAAACTGGGGACGTTGTTAAG 125775 30 100.0 35 .............................. GAATCAGAGAGATTAGGATTAGACCATGTTCCTTA 125840 30 100.0 36 .............................. TGAAGATAATAAAGCCTTAATTGATGGTGAATTAGT 125906 30 100.0 37 .............................. TTGAGAAAATTAGCTGAACAATGGGGATGGAGTACAA 125973 30 100.0 36 .............................. CTGCTATTGGAATAAGTGTAGGTAGTTGCACACCTA 126039 30 100.0 35 .............................. ACAATATAAGGTTCATCTTCAATCACAAATTTTTG 126104 30 100.0 36 .............................. AACTATATTTCCTTACATTAAGCAATATGTTATGGA 126170 30 100.0 36 .............................. GAAAAAGAACAATGGATTTCTAAAGAAGATACAGGA 126236 30 100.0 36 .............................. AAAGGTTTATTAGCTGCATATATTACTATTTCATAA 126302 30 100.0 34 .............................. AATAGTTGCGAACACATATTCGCATGTGGTATAA 126366 30 100.0 34 .............................. AATGTGTATAGCAATGCCAATAGTGGTTCTAATA 126430 30 100.0 35 .............................. TTATAATTAATCTGAATGTCACCGACTTTAATGGA 126495 30 100.0 36 .............................. AATATAAAATCCCCAAGAGATGTTGAAAAATATGTT 126561 30 100.0 36 .............................. TCATTAGCCAATTCCTTTAGAGATGATACAAGCTTT 126627 30 100.0 34 .............................. TCTAAAACACCTTTTTGTCTTAATAATTTAATAG 126691 30 100.0 34 .............................. TGGATTGGAAGATATAGACGAGGTGGAAGAAAAT 126755 30 100.0 37 .............................. TATCATTAAACTTAGAAATAAAATCCATAGGTATTCC 126822 30 100.0 34 .............................. AGGTATTATTTCAAAAGATCTGTGGAATGAATGT 126886 30 100.0 36 .............................. TCTTTTCTTCTATAGGTTAGGGAATAAACACCTTTA 126952 30 100.0 35 .............................. ACTTTAAGTGATTGGAAGAAAGGCCGTAGTACTCC 127017 30 100.0 36 .............................. TTAGCCATATCCCACATTTCATAATGTACTGGTGCA 127083 30 100.0 36 .............................. ACAGGAGATTTTAAACGGATTTGAAGCGTAAGGAGG 127149 30 100.0 35 .............................. ACCAGCTCAAAGCCTGTATAAACAAATGGCGTTTC 127214 30 93.3 0 .................A..........T. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.7 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : GAATTTGTTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAACGAACTATAATTATGCATTTGTATTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTGTTTGTATAATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTTAGCTATCTTTGTTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAAACTTCATTCCTTGGTAAATTTTTGGTGATGTGGTATTATTACTAGTATAGGGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : TTATAGAGTACGGAAAAGATTATTTTAATTTCTATATTTATTAAAAGAATTCGGAACAAAAAGATATATATTTTTAAAGATATGCTATGATATGCTTATATATAAAAAAATATTAAATAAAGTGAGGCCAGTTAAAAGGTTTATTTTTGACTGGTTTTACTTTATTTAAATTAATCTAATATAGCTATGATTTTAATATCTAAATTAGCTGGTTTTAGTATTTTTATGGTGATTATTATTTTATTCAGATAAGTCAATGGCAGATTTACAAAAGCAGCAGATTTTTAAAACGTAAAAATAATAAATTTATATTAAATAAAACATAAATTTTTTGAAAAGAATAAGTTAAGAAATAAAAATAACATTATGATTTATTTTTAATTTAATGTTAAACTTATATTAAGTATGGAAAATTTAGAAATATTTAAGGAGTAATTTATTATGAAGGATTCAACTCACAGAATAGCTATTCCTTCTATCTTAGAAGTTGGAAAAGGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //