Array 1 2045019-2042081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT618783.1 Propionibacterium freudenreichii isolate PFRJS25 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2045018 36 100.0 36 .................................... GCGAATGTCAGGGATCGGGTCTTGAACGCCACCGAT 2044946 36 100.0 34 .................................... CAGCCCGCAACCGCTCGACCTCACTCGACGCCAT 2044876 36 100.0 39 .................................... ACGAGCCAGCGAATACCACTGGCCGCGATTGGGGTTGAT 2044801 36 100.0 36 .................................... GGCCTGCGCCTGGGGGTCGCCCCCGCGCATGAAGTG 2044729 36 100.0 35 .................................... ACCACCGGCATGGCCGCCGACGGCGTGGACCGGCT 2044658 36 100.0 39 .................................... GTCCGACAAGGATGACGACATCGAGTTCTTCCAGGATGG 2044583 36 100.0 35 .................................... ACCGTCCCCGACGATGGCATCTACAGCCTCTATGC 2044512 36 100.0 35 .................................... ACCTGGACAGTGCGGGTGATCTTGCCACCCAGCTT 2044441 36 100.0 38 .................................... ATGCGCGCATTGGCGCAGAACTTGAAATGCTTGGACGT 2044367 36 100.0 37 .................................... AGGCGCCTGTGGTGACACCGCGATCACGAGCCAGCGA 2044294 36 100.0 34 .................................... CGACCTCACTCGACGCCATGCACACACCCCACAG 2044224 36 100.0 37 .................................... CATGCTGGAGTACGCTCGAATTCTCTTCCCCGGTCGC 2044151 36 100.0 38 .................................... AACGGCAAGGAGCAGATCCTCGCCAAGAACTTGGCGCA 2044077 36 100.0 37 .................................... TCGAACGCTTACTCCTGGTTTCCACGGGAACCTCGCG 2044004 36 100.0 38 .................................... TTTGCTTACTCAGGGCTTGTCTCTTTTGGTCGTTTTGC 2043930 36 100.0 39 .................................... TCCCCGCACGATCGCCGGAATGGTCACCGCTTCGGATGC 2043855 36 100.0 37 .................................... TTATGGCGCTGCTTGGGACGCCGCTCAGATCGCCGCT 2043782 36 100.0 34 .................................... CGTTCTCGTGCTGAGCTACGGCATACGGGGTGTC 2043712 36 100.0 38 .................................... AGTCGGGTGTAATCATTGACCTCCGCACCCGGCAAGCA 2043638 36 100.0 34 .................................... CGTCCATGTGTGAGCGAACCCACGCATCCTGACT 2043568 36 100.0 35 .................................... ACTTCGAGGATGCCGGCGAGGAAGCCGGTAGGAGT 2043497 36 100.0 35 .................................... GCGATCTCGGCGCTGGTGGGGGCGTTCTCGATTGC 2043426 36 100.0 37 .................................... CAGATGAGCGAACTGGATTTTTACCAATTGCTAGATG 2043353 36 100.0 38 .................................... GCGAGCCAATCGACATCGCCCGGAAGGTTAGCGAGAAA 2043279 36 100.0 40 .................................... CGGCATCATGTGATCACCCGACCCATGACCTGCTCCCACG 2043203 36 100.0 35 .................................... CGTTACTCATTGTGTTTCTCCTAGAACTTTAACGT 2043132 36 100.0 38 .................................... GGTGAGAATCCCGTCGCCCGTACCGGGCGCGAGCGTGA 2043058 36 100.0 38 .................................... GGTCATAGGTCGGATTATATCCGCCCCATGTGATTAAA 2042984 36 100.0 38 .................................... CTTGATATTGGGTCTGAGCTTGAGATTCAAGATATCAA 2042910 36 100.0 34 .................................... CTGTGCAGTCCGTCTCCACCGTGGAAGCCGACAA 2042840 36 100.0 34 .................................... AATCCGGACCAGTAATGTCAGGAATCTTGATCTT 2042770 36 100.0 37 .................................... CACGCGCTCAGGGTGAGGGCCCGTGGGATGGCTGGGT 2042697 36 100.0 36 .................................... CATTACTCATCGTGTTTCTCCCTAGAACTTTAGTGT 2042625 36 100.0 38 .................................... CGGCTCGTTCACCGCATCCTTCGGGGGTGTCGGGGCAG 2042551 36 100.0 37 .................................... GGCAGCCGCGATGGCTCTGGTTGTCTTGCGCATGCAA 2042478 36 100.0 37 .................................... TTCAAGAATTTTGTTGAAACTTTTGTCGATTTCTACA 2042405 36 100.0 36 .................................... CCGAATCGACGTAGACAAGCCAGGTCTTCTTTCCGG 2042333 36 100.0 38 .................................... ACGCCCCCAGACAAAGCCGAACCTAGCGGAACTTGACC 2042259 36 100.0 36 .................................... ATTGCCATTCGCTGCATCCCGCCAAGGGTGTCGGTA 2042187 36 100.0 35 .................................... ATGGAAGCTCGTTATACTGCGGAGTTGGTTTCAGT 2042116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 41 36 100.0 37 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : TCGGGCGCCGCGGAAGGAAGGAGGATCCGCTCTACAAGGCCCGCCGCACCCTCCGCACCGGAGCCGGGCTGCTCACCGAGAAGCAGCAGACCCGCCTCGAGGAGCTGTTCGCCGACGAGCAGCATGTCGAGGTCGAGGCGACCTGGGGCATCTATCAGCGGATGGTCACCGCCTACCGGGAACCTGACCGGGGACTCGGGAAGTTCGTCATGCAGCAACTCATCGACTCCCTCACAAGCGGCATCCCGGCCGGACTTGTCGAACTGCGCAAGCTCGGCCGGACACTGAAGCAACGCGCCATCGACGTGCTCGCGTTCTTCGACCGGCCCGGCACCAGCAACGGTCCCACGGAGGCGATCAACGGGCGCCTCGAACACCTCCGCGGCTCCGCCCTGGGCTTCCGGAACCTGACGAACTACATCTCACGGAGTCTGCTCGAAGCCGGCGGCTTCAGACCCCACCTACACCCTTGATTACGAAGAGCCGGTTAAGTCAATGGA # Right flank : GGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCCGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 2046491-2046954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT618783.1 Propionibacterium freudenreichii isolate PFRJS25 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2046491 36 100.0 36 .................................... CATGAGATTGGGACACTTTCCTCCAGCGTTGTTCTG 2046563 36 100.0 34 .................................... CGCGATGTCGCTCACATTGACATTGGCACATGGA 2046633 36 100.0 35 .................................... TATCCGCGCCGACACCGGAAGACGTAGCTGTGGTT 2046704 36 100.0 36 .................................... ATTGGGGAGGCAGCACCACCACCGCCCCACACGGCA 2046776 36 100.0 35 .................................... TGCGACACCGATTCGCTGCACCTGATCACCGACGA 2046847 36 91.7 36 .......................AA......A.... AGCCCGATCAGATCGCAGAGGACCGCACCCTACGCA 2046919 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.4 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CACGATGCCCTCCAGCGCCCACCGCATCCCGCGACGAGACAGCTTCGCTCGCGCGGGCGCCGCCGCGGTGAGGTCTTCCCGCCAGGAACGCCCGCAGCCGGAACACTTGTATCGGCGGATCCGGACCAGCAGCGTCGTCGGGCGGTGTCCGAACGGCTCGTGCGCGAGCAACCGCGTATCAGTCCCGCGAGAAAGCCCCTGGCTGCCACAACCCCGACACCACGGATCCGGCTCCGCAACCCGGCACTCGATCACCGCCCGGTCCGACTCAAGACACTGCCCCACCGCGACGAGACCGAGCTCGTCCAGTCGGCAGAACACGGTCAGATCAGGGGTCGCAAAGGTAGCGTGGAGCACGTCGAGGTCTTCCGGCAGATGGTCAGTGTGAGAACTTCCATCATCGGGAGACCTCGACCCTCACCCCCGCAACGACGCGCTCAACCACCTACCCCCTCAACTGCGAAGAGCCACTTAACCAGACCAGCCGCCAATTCCTGAAC # Right flank : CTCGTTGAACATTCTAGAATTGGCAATCCCGACATGACATTGCGGCTCTTCACAGATGACGGTGTAGTTCGGTTCTGAATCCTCCGGTGTCCAGTAGGGCGCGGATGACGTAGTGGGCAAGGTTGCGGAAGCCCAGCGCGGTGCCGCGGAGGTGCTCGAGTCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGGTGGTCGAAATAGGCCAGCACATCGAGGGCTCGGCGTTTCAGTGTCCGGCCGAGGGTGATGAGTTCTTTGAGCTGCTTGGGCACCCCGTCGGTGAGGTCGTCGATCACTGCCTGCAGTTCTCGCTTCCCGGCAGCGCGGTCGGGATGGCGGTAGGCGGCGACGATCCGCTGGTAGACGTTCCAGGTCGCCTCGACCTCGACGTGCTCATCACTGGCGAACACGGCCTTCAGGCGGGTGATCTGCTTGTCGGTGGGCAGGTCAGCGCCGGTGTGCAGCACGCGGCGGATCCCGTAGAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 2050901-2051518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT618783.1 Propionibacterium freudenreichii isolate PFRJS25 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 2050901 35 100.0 35 ................................... CAGGCTTCAGGTCCGGCCTCGGCCCACAGGATCGG 2050971 35 100.0 37 ................................... CCAGGGCCTGATCGAGCTTATTTATCGAGCAGGTGCC 2051043 35 100.0 36 ................................... CCCTGCACCGCCGCTCACCTCACGCCATTTCGACAG G [2051060] 2051115 35 100.0 40 ................................... CGCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 2051190 35 97.1 39 ......................A............ CTCGTCGTGGACGCCGGGCACGTCCATCTATCTGGCAAA 2051264 35 100.0 40 ................................... CATGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGGGTG G [2051281] 2051340 35 97.1 38 ..............................C.... CTCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATT 2051413 35 100.0 36 ................................... AGCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 2051484 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 99.4 38 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG # Left flank : GCCATCGACAGGTGGCCGACGACGATCCCGACCAGACCCCACCGCAGGCCGGCGCGGGAGATCTTGGCCCGCGGCGGCGCCGCAGCGGTGGTGTCCTGACGCCACACGTGCGAGCACTCCTTGCAGCGGTAGCGGCGCACGGTGAGCACCAGCGTGGTAGGGCGCCACCCGAACGGCTCGTGCGCCAACTCCCTGCTCACCGTGTCACGGGGCACGCCCTGGCAGCCGCACCGCCTGCACCAGTCGTCCGGCTCCACGACCCGGCACGCCAGCACGGACCGGTCAGGCTCGAGCAGCTGGCCGGTGACCTCCAGACCGAGGCCGTCGAGGCGGGTGAAGGTAGTCAGGTCAGGGCGCGTGAAGGTAGCGTCAGGCACGTCGAGGTCTTCCGGACGGGTTGTGTGAGAACTCCCATCATCGGAAGACCTCGACCCTCACCCCGACACCGACGCGCCGCCCCAGGTCGCACCACAGCTACACCCTCATCTGTGAAGAGCCAC # Right flank : GCTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGG # Alternate repeat : ATTGCCCCTCCTTCTGGGAGGGGCCCTTCATTGAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //