Array 1 95619-95042 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFHD01000009.1 Escherichia coli strain ECSC004 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95618 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 95557 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 95496 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 95435 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 95374 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95313 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95253 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95192 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95131 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95070 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112918-111120 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFHD01000009.1 Escherichia coli strain ECSC004 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112917 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112856 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112795 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112734 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112673 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112612 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112551 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112490 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112429 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112368 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112307 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112246 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112185 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112124 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112063 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112002 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111941 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111880 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111819 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111758 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111697 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111636 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111575 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111514 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111453 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111392 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111331 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111270 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111209 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111148 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //