Array 1 201226-203084 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIZ01000001.1 Escherichia coli strain EC_35_A NODE_1_length_319019_cov_22.108064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201226 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201287 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201348 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201409 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201470 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201531 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201592 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201653 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201714 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201775 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201836 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201897 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201958 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 202019 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202080 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202141 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202202 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202263 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202324 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202385 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202446 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202507 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202568 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202629 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202690 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202751 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202812 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 202873 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202934 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 202995 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 203056 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218586-219286 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIZ01000001.1 Escherichia coli strain EC_35_A NODE_1_length_319019_cov_22.108064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218586 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218647 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218708 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218769 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218830 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218891 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218952 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 219013 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 219074 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 219136 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219197 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //