Array 1 353457-354349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWU010000003.1 Listeria innocua strain FSL L7-0125 NODE_3_length_359756_cov_56.548595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 353457 36 97.2 30 .............................C...... AAGAAATCAATCGCAAAGTACGCGCAAATT 353523 36 100.0 30 .................................... ATCGTAGCAATTCTTTTCACGGCGATCACA 353589 36 100.0 30 .................................... AGTTATACAAACTGGTTCTGCTTTAATTCA 353655 36 100.0 30 .................................... ATAACTATATACGTTATAGTATGATCCATC 353721 36 100.0 30 .................................... TTTAGGCACACACTCGATGCGTAAAACGTT 353787 36 100.0 30 .................................... CAATGGCAACTTAGGTGTGTTCAGCTACTA 353853 36 100.0 30 .................................... GCAATCAAGGGTATATTCTTTGCACTAGTT 353919 36 100.0 30 .................................... ATTTTCAGCAATTATTGCGCCGGTTGTGGT 353985 36 100.0 30 .................................... TGTTTATGAATGATAAATCAGGAAAACAAT 354051 36 100.0 30 .................................... ATATAAAGGATAGAATTATTATTAATGATT 354117 36 100.0 30 .................................... TAAAGGTCTGTGGAATGGAATTTCTGACAT 354183 36 100.0 30 .................................... TAACCTGCGCTCCCACCGTGGATTCTTTCG 354249 36 100.0 30 .................................... AGAGAGGGTGAACTCTAAATAATCGGAAAT 354315 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTATTGAACCTAGAAAAAAAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTAAACCATTATGAAAGAGAGGTCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAAATTTTATATACCAAAACGACTTAGACTTCCTAAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGAGGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8436-7496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWU010000014.1 Listeria innocua strain FSL L7-0125 NODE_14_length_8483_cov_78.686058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 8435 36 97.2 30 .............................A...... ACAAAATATTTAATATTACTGATGGAAAGA 8369 36 100.0 30 .................................... CATCGACGGGGTTTTTTGTTTATTTTGAGC 8303 36 100.0 30 .................................... AACCATCCCAGTACTTGCTGCACTAAAACA 8237 36 100.0 30 .................................... CTTGACTTAGATGTTTCAGAAGACTTCATA 8171 36 100.0 30 .................................... AGGTGATTATTGATGACAACAAATAAAGGA 8105 36 94.4 30 .............................A....G. AGAACTATTGCTTCAGTTATAATAGATATT 8039 36 94.4 35 .............................A.....T GAAAAGAAGAGTTGGATGTTTCACTTGATGTTATT T,T [8016,8022] 7966 36 80.6 27 .......G...G...............A.A...GCT ACCTTTAAAGGCTTCGATGATTAAAGC G [7941] 7901 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 7836 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC TT,T [7811,7818] 7769 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 7596 36 94.4 29 .........T....C..................... TACTAATTTGAAATCTATTGTGGAGTGTT 7531 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 13 36 93.6 39 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : ATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGA # Right flank : TAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCTCAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAATATGGGAGAGAAAAAAACAACAGAAATCCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATAGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTACTACAAGAATAGATTGGTTATTATAATAGG # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.81, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //