Array 1 88-1214 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGQ01000094.1 Escherichia coli strain KCJ3859 NODE_233_length_1237_cov_3.78919_ID_465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 149 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 210 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 271 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 332 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 393 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 454 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 515 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 576 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 637 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 698 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 759 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 820 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 881 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 942 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1003 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1064 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1125 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : TCGAAGAAGAAAGGGAAATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27544-26601 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGQ01000086.1 Escherichia coli strain KCJ3859 NODE_16_length_53118_cov_5.46515_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27543 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 27482 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 27421 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 27360 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 27299 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 27238 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 27177 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 27116 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 27055 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 26994 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 26933 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 26873 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 26812 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 26751 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 26690 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 26629 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //