Array 1 111628-109936 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCDW01000004.1 Moorella thermoacetica strain ATCC 35608 MOOCA_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 111627 37 100.0 35 ..................................... CGTATAGCCGAAAGGCTTGCACAGCCTGGCGTATC 111555 37 100.0 35 ..................................... CTGTCCTGATTAGACCTTTGGTAAGACCGTCTAAT 111483 37 100.0 35 ..................................... CGAAAAATTTTTTGAGGATTTTTTTCGGGCGAGAG 111411 37 100.0 34 ..................................... ACTCGTTCGCCACTCTTTCAAATGGCGAACAAAT 111340 37 100.0 35 ..................................... TGGAAATGTGGTATAATTTAAGCAGGTGAAGGTGC 111268 37 100.0 35 ..................................... AACATATTCTTGGACTTGATCGGATATGGATCTAC 111196 37 100.0 35 ..................................... TGGATGGCAAGGAATATAAGGCCCCGAAGCCGAAA 111124 37 100.0 34 ..................................... TGACGGTGCTTTTAACCCTTCGTCTGATACGCAA 111053 37 100.0 35 ..................................... TGCAGGGCCGGAAGCTAGAGGACCACCGGAAGGTC 110981 37 100.0 35 ..................................... ATCTTGTATCATCTCAATCGTTTTGCCAAATAGCC 110909 37 100.0 36 ..................................... CGAATCCGAATACGGGGGCATATGCTGCCTATTGTC 110836 37 100.0 34 ..................................... TTTCTATAGTCCGCAGCGGAGCCGAAATTCGGTC 110765 37 100.0 36 ..................................... AATGTCTACATATACCTGTCCTGACTCGCCAATGAC 110692 37 100.0 35 ..................................... ATCGATCACGGCCATATGGGGGTTCAGGCCGTCAA 110620 37 100.0 35 ..................................... AGCACAAAATAATCATTTTCATAAACCTCGTGGGC 110548 37 100.0 35 ..................................... TCTGCGCTGCCATTAACGGCTACCTGGAGGGCCTA 110476 37 100.0 34 ..................................... AACCACTAAGTAAGCTTTGCCATCCAACAGAATC 110405 37 100.0 36 ..................................... CCTGGTCGCGCAGGAAACGCAAAACAAAAATCTCAT 110332 37 100.0 35 ..................................... CACAAGGGCCTTGATAGCGACATCAGCGCTAATAC 110260 37 100.0 35 ..................................... CTTTTGTGTCTCTTCCAAGGGCACAGGATAAATCA 110188 37 100.0 35 ..................................... CGTTTAAGCCCCATCTCTGCCGCTTTGTTGTGCAC 110116 37 100.0 35 ..................................... CTGCGAAGTGCCGGAGGGGTTTACTTTGACCAGCC 110044 37 100.0 35 ..................................... CTAACATCAGCCATGGCAGACTCAAAATCCATAGC 109972 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 100.0 35 GTCGCGCCCGGCTTCCATGCCGGGCGAGGGTTGAAAC # Left flank : CGGTAAATATATCGCTTTTCTTAAGTGGTGTAGATAACATGTATATTTTAATTACTTATGATGTTTCTACAGAAACAGAGGCAGGTAAAAAACGCCTGCGTAAAGTTGCCCAGGTATGTAAAGATTTTGGTCAGAGGGTGCAAAAGTCCGTCTTTGAGTGTTCGGTCAACGAAGCCCAGTTTGAACAGTTAAAGCACCGGCTCTTGCAGTGTATCGATGAAAAAAGCGATAGCCTGCGGATTTATCGACTGCGCGAACCCGCGAAAAAATACATCCAGGAGTATGGCGTCAACCTTACGATTGATTTTGACGCCCCCCTGGTTTTGTAAACCCGCGAACATATAGCAAGGGGCAAAAGGCCGAAAGGTTCGCGTTCTTTGGCGAATCAAGACCTGAAGCTAATTTTAGAGGTGAAGCATAATGAAGTATTCTAATTTAGTCATCAGGTTCGCGCAGAGTAGTAATATAGGGGTTGTCCGCCAAGGGTTTTAGCGCGAAGT # Right flank : AGGACGGCATCAACGGCGTAGCTTGGGTAGATGAGTTATGCCCGGCTATTACGCCCAGCTTACATTGATCGCAATGCTCTCCTGCTCCACCCATTTGCGGTGCTTCAGCATGGCCTGCAGGAGGGGGTGCCAGGGGGCGTAAGCCGGGTCCTCAGCCAAGTGCCGGAGCCTGGCGGCATACTCGTCGCCGAAGGGTATTCCGGCCGGCAAATACCTGGTATAAGTAGTGACATCCATAAGGTAGGGCTGCAAATCGGGAATTAAGTTGCGGCGGATATATTCGCAAATGCGGATGCCGCCGTAGTCCATATCGCCCCAGTGGTAGACCGGGGGCCTGGCGGTGGCTCCAGGGGATTCCCGGTAATCCTGGAGCCGGCGTAAAAAAAGCTGCACGCCGCGGTGGGGGAAGCCGCCGGTATATACTACTAAGCCAGCAGGGCCCTCAACCGCTAAACCCCGGCCCCCTCCCCCTTCCCGGCAAGGTACAGCCAGCTCACTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCGGCTTCCATGCCGGGCGAGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCGGCTTCCATGCCGGGCGAGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.30,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 119998-116978 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCDW01000002.1 Moorella thermoacetica strain ATCC 35608 MOOCA_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 119997 29 100.0 36 ............................. CTGCGGTAAAAGTAGTACTATAATCAACAGCAGATT 119932 29 100.0 35 ............................. ATAATCTACAATTATTCCTTCCTTTTCGGCCAGCC 119868 29 100.0 36 ............................. GGGAGATTTTCAAAGTCTCGACGTTATGCTCTACGT 119803 29 100.0 35 ............................. AAACTCCACCGTCCCCTCCTGCGGGTCTAGCACCC 119739 29 100.0 36 ............................. TTTGCCCTTGCGCCCTTGAGTTTTCTGCCCGTCGAA 119674 29 100.0 37 ............................. TTTAAGCTTATCAACAGCCCCGCAGGCAATGGCGACC 119608 29 100.0 37 ............................. TACTTACCCGAAGGTCATTGGCCGCGGTGGTATCAGG 119542 29 100.0 36 ............................. TCGACCGCCTGAAGTCAATTCTCTACGCCAGTAGCG 119477 29 100.0 36 ............................. CCCGCTCTCCCGAAACCCTGACCATCCCCACGGCAG 119412 29 100.0 36 ............................. TCGGAGATTGCTGTATTTGTAAATGGGGCAAAAGAG 119347 29 100.0 34 ............................. GGGTCGTCTTTACCGGTCCGTTAGCCTGCTCCGG 119284 29 100.0 36 ............................. ATCCCCAGGAAGAACGGCTGCTGGCCGATCCTGTTT 119219 29 100.0 37 ............................. AGCTTTTCAATGGATGGATTGCATCGACCGTGTTCAA 119153 29 100.0 35 ............................. TTCTTTTATAGCGGATATTGAAGCTGGACGTAGCA 119089 29 100.0 36 ............................. TAGCGATGACGGAATAGCCCCGTAAACCGTCGAAGC 119024 29 100.0 35 ............................. CCCGATAACGCGGAATGAGTGCCGCGAGTGTGCCA 118960 29 100.0 34 ............................. TGTTAAGGGGCACAAAGTGTTTGTCCCCTTCCGG 118897 29 100.0 37 ............................. GGTTTATAAGCATAAGTTTCCGTGCCGTGGGCCGAAG 118831 29 100.0 36 ............................. AATGGATCGTCTGGCATGGTGAAGAAGAGTACGGCA 118766 29 100.0 37 ............................. TGCGGCATATCAAGCAAAAGAAGTCGATTTACGAAGA 118700 29 100.0 37 ............................. AAGAAACCGGCGACAAATAAGCCGGTTTTCTTTTTGC 118634 29 100.0 35 ............................. TATAAACATCAATTAAATCCGCATCAAGCATTTTA 118570 29 100.0 37 ............................. TCCGGCTCGGAGCCAGGTGGTTTCTTCCGTGACAGGG 118504 29 100.0 35 ............................. TCCTTTTACTGATGACCCTGAAGGCAATATGAAGA 118440 29 100.0 35 ............................. TTACTCACCGAGGTTTCCAGTCGGGGCGACAACCG 118376 29 100.0 36 ............................. TTACGGGGCGTAGGCGGAGAGCCGAAATTCATAAAG 118311 29 100.0 36 ............................. CAAGCTCTCGGAGCTCTTCTCTCAACATTCCCACCC 118246 29 100.0 36 ............................. CTACCAGATCGCTTGAATTCGGAGAAGGTCTTTATT 118181 29 100.0 37 ............................. CTTTTCGTCCAGGTGGTCCAGGCGGCAGGCGTCTTCG 118115 29 100.0 38 ............................. TTCGGGCAGGGAATAAAATATTTCTGCCGGCAAATCTC 118048 29 100.0 35 ............................. CGCTCATGTAGAGGTACTTTTCAAACCCGTTGAGT 117984 29 100.0 35 ............................. CGTCCCAAGCCGCTCCATACGCCACCGGGGTACCC 117920 29 100.0 37 ............................. TACATTGAGCCACCCAGGCATCACGTTCCCTGGGTGA 117854 29 100.0 36 ............................. CTACCAGATCGCTTGAATTCGGAGAAGGTCTTTATT 117789 29 100.0 37 ............................. CTTTTCGTCCAGGTGGTCCAGGCGGCAGGCGTCTTCG 117723 29 100.0 38 ............................. TTCGGGCAGGGAATAAAATATTTCTGCCGGCAAATCTC 117656 29 100.0 35 ............................. CGCTCATGTAGAGGTACTTTTCAAACCCGTTGAGT 117592 29 100.0 35 ............................. CGTCCCAAGCCGCTCCATACGCCACCGGGGTACCC 117528 29 100.0 37 ............................. TACATTGAGCCACCCAGGCATCACGTTCCCTGGGTGA 117462 29 100.0 36 ............................. TCATAACAGTAACCTTCCCTGTAGAGGAATTAAACT 117397 29 100.0 36 ............................. CTGGCTCACCGTAATGCGGTATTTGGGTAACTGCAC 117332 29 100.0 36 ............................. TTAGATATAATAGGTTAAAAAGCACTGGAATATTAG 117267 29 100.0 35 ............................. TTTTAATCCCGCCTCTTTCAGTTTTACGGCCATTT 117203 29 100.0 36 ............................. CTGAAGCAATCCCAGGTCCTCATCGGCAAAAACTGG 117138 29 96.6 37 ........T.................... TACCGGGGGCCTTGCTGCGCATAAAAGTCCAACTACG 117072 29 100.0 37 ............................. GGCAGTTGATCAAAACTATCCACGGCCACCTGGCAGA 117006 29 96.6 0 ....T........................ | ========== ====== ====== ====== ============================= ====================================== ================== 47 29 99.9 36 GTGACCATCGACCATAGAGGAATTTGAAC # Left flank : CTGGAAAAGACGATTTTGCACCGCAAGCTAAAAAGGAATATTCGCTATAAAAGTCTTGTCCGGTTAGACTTATATAAGCTTATAAAGCACCTCCTTGGTGAAGAAAAATATTCCCCCATGAAGGTGTGGTGGTAAATATAAGAGTGATCCTGATCTATGATATTAATACTGAAGACAACGACGGCAAACGGCGCCTGGTAAAGATCATGAAGACCAGCCGTAAATATTTATCTCATGTGCAAAAATCCGTTTTTGAAGGAGATATTACCGAAGGGCAAATATCCTTACTTAAGAAGGAAATAATGGCCATAGTTAACATGAAAAAAGACTTTGTCATCATTTATAGCCTCAGGGATGGAGTAAAGCTAAACCGTGAAATCTTGACTGACACCCCCGACCCTACAGATAATTTCCTGTAGTGTAAGTGCAAACTGGCGGTTTGACGCAGGGGCTTTTAAAAAATTGCTAAAATCCCTGTCGGGACAAGCCTTTCATCTGCG # Right flank : AGGGTGGAGATAAAAATCTGGTGATAACGTCAAAGGTGGAGTAGTAATCGGGCTGGGTACCCGGTTGCAAGTTTTTCAGCAAGAAATGGTGCGACGTATAACTGGTGATAGCGATATAGACTTAACGTTACCAGGTAAGGGAAAGTGTGCTTACTTCATCATCACTCCAGATACCCATGGCGCCTTTGATTTTCTGGCTTCATTGCTGTTCACCTTTTTATTCGTTCGGTTGGTAGAGGTTGCTGATACCTCTCCCAATGGCCGTTTACCGGTGCAGGTTAGTTTTCTTCTGGATGAGTTCGCCAATATCGTAAGTATTCCGGAGTTTGAAAAGAAAATCGCCACCGTCCAGAGCCTAAGACTGAAGACGAACTTAACGATGGCGGAAATCAGGATTACCATGATACTAAGGACCAGAAACCTCTAGAAGAAGGGGCAGAAGAGGTGACGGAAGAAAATATAAAAGAGGGAGATAGGGTTATAGAGATAGAAAACAAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCATCGACCATAGAGGAATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //