Array 1 8547-7299 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLL01000121.1 Salmonella enterica subsp. enterica serovar Anatum strain 240 NODE_121_length_13855_cov_19.2723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8546 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 8485 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 8424 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 8363 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 8302 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 8241 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 8180 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 8119 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8058 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 7997 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 7936 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7875 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7814 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 7753 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7692 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7631 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7570 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7509 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7448 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7387 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7326 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTAGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29391-28873 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLL01000049.1 Salmonella enterica subsp. enterica serovar Anatum strain 240 NODE_49_length_29433_cov_20.7303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29390 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 29329 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 29268 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 29207 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 29146 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 29085 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 29024 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 28963 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 28902 29 93.1 0 ............TC............... | A [28875] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //