Array 1 69932-72393 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSTE01000023.1 Vibrio cholerae strain DL4212 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 69932 32 100.0 33 ................................ TTTGAGGATGAAGCAGTGCGCGCAGCATGGTGT 69997 32 100.0 33 ................................ AGATTCTGGCATCGTTCTCACTGGCCAAGGTGT 70062 32 100.0 33 ................................ GATAAATCAGACGTAATATCTGAGATTAAAAAA 70127 32 100.0 34 ................................ GAAACCAAAAAAGTAGATATTGATATCTACGTAG 70193 32 100.0 34 ................................ GCCATTGACTGCTCAAACTGAGCGGCGATCTTGA 70259 32 100.0 34 ................................ CAGATCAGGAAGATCAACGGTTGCAACGCCAGCC 70325 32 100.0 34 ................................ GCCTTCAACAGTTACCTGACCAGCAAACAAAGCT 70391 32 100.0 34 ................................ ACGTATGGCGCAATTTGCAAAGTAGAAATGTATT 70457 32 100.0 34 ................................ GGTGAAGTCGTGATCGGTCAGAACAGCCGAACCA 70523 32 100.0 34 ................................ ACGTCATGGTTGACGGCTGTTTGTACATTTACGG 70589 32 100.0 33 ................................ ATGAACCTCCCACAATTGCCAACCGTATGGTAT 70654 32 100.0 36 ................................ AAATTCAACTTGGTGACAACCTCATAACGTTTGAGA 70722 32 100.0 33 ................................ CGTAATAAAGTCATTACTGAAACAAAAGGCGCG 70787 32 100.0 34 ................................ TAGCCCAATACACTATCAACACCGTGGATAAAAC 70853 32 100.0 33 ................................ TCAGAACTGCATCGTACAATTGTGACGCACCAG 70918 32 100.0 34 ................................ AAGGAAAAAGCAGCCGATCGAGCGCATCAAGTTG 70984 32 100.0 35 ................................ GAGGCATTGGAAAAACAGGGCAACAAGTAATATCA 71051 32 100.0 33 ................................ AGGTTGGTTATGGTGAATCAGCTTGTGTAGATC 71116 32 100.0 34 ................................ AGTCACACCTTTATGCGGGGGCGGTTGTTATCGA 71182 32 100.0 33 ................................ TGGTAAATCTAATCCCACAGGCAAGCAAACGAA 71247 32 100.0 33 ................................ GTGATCATCACCTTGAGCGAGTAGCGCAGATAG 71312 32 100.0 34 ................................ ATGCTCGCTTAGTTGGTGATTTGCTGTAACGCTC 71378 32 100.0 33 ................................ AAATCAGCACACGAAATGGCACGCGGAACTGTT 71443 32 100.0 33 ................................ CAGTGGAAGCTGATAATTTTAGTGCTGCGGGTC 71508 32 100.0 34 ................................ CAAACTGATGTACTCGCTATCGCTCGACACAACA 71574 32 100.0 34 ................................ TTGAGTGTTAACCGCAAAACGGGCGAATTGACGG 71640 32 100.0 34 ................................ CCGTTCTCCTGTTCCTCAACCTCAAATATGGTTA 71706 32 100.0 34 ................................ GATTTCATCGGGTAGGAACGCGGGCGAATCAATG 71772 32 100.0 33 ................................ TTGATCCAATCTTTGGCAATCTGCTCATCCGAG 71837 32 100.0 33 ................................ AGATTGAGTCGGAACTGGGTATCAATAAGAATC 71902 32 100.0 34 ................................ CTAAAACCGATTGCCGAGAATCCTGATTCCAACG 71968 32 100.0 33 ................................ AAGAATCTTGCTAAGTTAGAAAAGAAATCAGTT 72033 32 100.0 34 ................................ AAGGTGTTTCCTCCCGATTTCGGATAACCGAGCA 72099 32 100.0 34 ................................ TCTAGGGATTTTGCGAGCATTTCCGCGCATTGCG 72165 32 100.0 34 ................................ CAAAAGCAGAACATCAACCGAAGAAAGATGATTA 72231 32 100.0 33 ................................ TGAGACTTTTGGCATGACCGAATATCAAGAGTT 72296 32 100.0 34 ................................ AACAACCTTGGCCAAGACGAAAACTGATGTTGTC 72362 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAATCGCCTCAGACAATTAGCTAAGGTGTGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGAAATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTTGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATTTTATAGTCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTTCCTCTAAGAAGAGGCA # Right flank : TAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAAGGGGACACTTTACCTGAAGCTCCAAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTCGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCAATTGCTGCGAGTATCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 10603-9225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSTE01000001.1 Vibrio cholerae strain DL4212 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 10602 35 100.0 36 ................................... AACCCTAGCTTTTGGTTGTTAATGTGCCATTGCTTT 10531 35 97.1 35 .........T......................... GCAATGTTGGTTGTAGTTGGTCTTTCCATTAATAT 10461 35 97.1 34 ......................G............ TGGATGAGCTTCGTCGCGACGACGCCAGCGTTGG 10392 35 100.0 37 ................................... TAACGGCGTGGCGGTTACGTAGAGACTGTTGGCTTTC 10320 35 100.0 36 ................................... TTTATCGCCTTCGCTGTCCACGTAAAACTCTACTTG 10249 35 91.4 34 .............T....A...............T TGCCAAACACAATTGCATCGTAAAATTTGCTTGT 10180 35 94.3 36 ..C.G.............................. TTAATGATGGTGGTAGCAAGGTCGGTCACAAATAGC 10109 35 100.0 35 ................................... GTCGAACCAACGTTCATCAAATGTAGCTATAGTAT 10039 35 100.0 36 ................................... TGCATCGGCCACCGCCGCAACCGAACCCGCTTGCAC 9968 35 100.0 35 ................................... CTGTTGATGATTGAGTTACTGTTACTTCCAGATAA 9898 35 100.0 35 ................................... ATAGCCCACTTTCTTGCGCGATACCGTGGTGATGT 9828 35 97.1 38 .........................T......... TCCCAGTGATTCTGGTAATAACGAGCGCGAGACTTTAA 9755 35 100.0 37 ................................... CGATCATGCTTATTTTTCTTTTTGTTGCGATTGTTCT 9683 35 100.0 35 ................................... ATCGTTGGGTTTAGTGGATCTTGTGGGATTAACAT 9613 35 100.0 35 ................................... AGCATGAGTTTGTTCACTTCAAACACGGTTATTTT 9543 35 100.0 36 ................................... TTCCAAGACTGGGTCGTGGCCTTCAGATTTTTGTTT 9472 35 100.0 35 ................................... AAAAAGAGAGGAGTCGCAAGGGCGCAAAACTATGG 9402 35 100.0 36 ................................... AGCGCCGTTTCGAGTTCTTTGTACGTGAATTGTTTT 9331 35 100.0 37 ................................... GTGTTGATGTTTACAGTTCAGTAGTCGCCTTTGTTCG 9259 35 91.4 0 ................................TTA | ========== ====== ====== ====== =================================== ====================================== ================== 20 35 98.4 36 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : GATTAGAGAGGTGAAAATAGCGCTGAAACTAGGCAGTACACCCAAATTTTGGAGGCCATAGAGCATGAAAGTCTACTTGGCGTGTTTTGATGTTGACGATGATAAAAAACGACGCAGATTGAGTAAGTTGCTGCTTTCCTATGGCGAAAGGGTACAGTTTTCCGTTTTTGAAATTACGCTTAAAAACGAAGCAAGTTTGAAAAAGTTGCTTCAGCGGTGCAAACACCATGTTGATGAGGGAGACAGTTTACGCTTTTATGCTTTACCATTGAACGCCCGAGAAGGCTCGTTTGATATCGATGAGGAGCCAATAGCACGTTTCCCACAGGCCGAAATTCTCTGAAGGTTTGCTCTTTAACAATTTGCCCTTTCATCCGCTGAAAAACTTGGCTAAGCTGAGGTGTCTAAATTTGGTGAAGCGAACCCTGACTTGTGGATAACTTTAAGTCAATCAAAAGTGCTCTCTATCTTATTGAATCCGAAACTCAATTTAAGGGTAA # Right flank : TTTAGGATGGGATTTGATCCTCGGTATTGGTGGTGAACCTAGTTATACTTAAGGCAACAGCGATAACTTGGAAGTGGTATGCGTTTATTTTTAGATACCGAGTTTACAGGCCTAAAGCAAGACGCTGGGCTACTCAGCCTTGCATTGGTCGATGAGCACGGTAGGGCTTTTTATGCAGAGTGCCAAGCAAGGTATAACGCTCCAGTGGATAACTGGATTACTGAACATGTGCTTGCTCATACTCGCTGGTTATCCTTATCTTGTTGCGCGCCAAGTGAGTGGAAGCAAGAGGGGCAGGTGCTGTATGGTTTTGATAGTGATGAAAATATTGCCCACCAGCTGAAACAATGGTTAAGCCAGTATGATGAGGTAGAGTTGTGGGCTGATTGCCCAGCTTACGATTGGGTGCTGTTTTGCCAGCTATTTGGTGGCTCGCAGTATTTGCCTCACCCACTCTCTTATGTGGTGAATGATTTCGCTACCCTGCTGACGTTACAAGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //