Array 1 113422-114832 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGC01000003.1 Serratia marcescens strain JES_110 NODE_3_length_549784_cov_9.220532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 113422 28 100.0 32 ............................ TCAATGAAGAGGAAGGGATGCACCAAGAGCCG 113482 28 100.0 32 ............................ CTACGCGGTAGGGATATATTAGGGATGGCAGG 113542 28 100.0 32 ............................ CTCTACCGACTGTTGGAAGGCTTCAGCGGGTA 113602 28 100.0 32 ............................ TGCCCGTTCCCGGCGTTCGTGGCGGGGTTCGG 113662 28 100.0 32 ............................ TATCTCGGCAGCATGTTTATCGGCTATGCCGG 113722 28 100.0 32 ............................ AAAATGGTGCACGTCTACAACGGCGCGGTATG 113782 28 100.0 32 ............................ CGGAACGCGACGAACCCTTCGAGGATGTTGGC 113842 28 100.0 32 ............................ TGGGAATTCAGTGGTGTTGTATAGAAAGCCGA 113902 28 100.0 32 ............................ TGAGCCTCACAGGCGCGCCCCCTGAGCGCAGC 113962 28 100.0 32 ............................ AGAGACATTTACAGGTATGGCAATAAATCCAT 114022 28 100.0 32 ............................ GACCAGTCTGCCTCCGGCTCCAGCACCGGATG 114082 28 100.0 32 ............................ AGCCATCAGTATTACCAGCTCCGGATCAAACC 114142 28 100.0 32 ............................ CTCAATGCGCGCGGCAAAGTCGGCTTTAACGC 114202 28 100.0 32 ............................ AACTCCGGACAGAACTTGCTGGGTCGGGCGGC 114262 28 100.0 32 ............................ AACCACCAAACGGAGGGCGACATGCCTTTAAC 114322 28 100.0 32 ............................ AACAACCATCACCTGATAGACGCCGACGAACA 114382 28 100.0 32 ............................ CATGAGCGACCCGGCGGCGACCGCACAACGGC 114442 28 100.0 32 ............................ AAGAGTTGCTTCATTTCAGGGCTAAGCGGAAC 114502 28 100.0 32 ............................ TGGAAGATTTCATTGGCACTAATCATCACCTC 114562 28 100.0 32 ............................ GGTAAATTTGCGCAGTGTTGCAATAAGCGTTA 114622 28 100.0 32 ............................ TGATTTGAGAGAACACCATGAAAGACGCAAAA 114682 28 96.4 32 .............T.............. TGGGACAGTCCGCTGAACCCGGTGCGCCCTCT 114742 28 96.4 32 ..T......................... GACGATTACGATTTCGAGAAGCCCAAGGCCGA 114802 28 96.4 0 ....................A....... | A,A,G [114822,114825,114828] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCCGCTTCGGCTTCAAACCGGCAGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACCACCGGCAACAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTCAAAACTCCAGTTTCACCAGCTGTATATAACTGGCTATTGGGCTAATGCGATTGGTGATAATACCAATCTGGGTGCCCGCCAATTTTCTTTCATAGATTTGAAAGCGACTCTTTTCTCCAGTCTTACTTGCGAACCCTTTTTTGAGCGGTCAATTTAACTTATTGATTTTTTTATGATAAGTCTTTAAGTGATTTTAAAAAGGTTTTTTGACACAACAGATAGATTTTCTTTAGACAATCAGCTGATTAGCGCTAATCTTCAACA # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCTGGCATTGATCTGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAGCAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGGACCTCAGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGAGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 123313-125320 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGC01000003.1 Serratia marcescens strain JES_110 NODE_3_length_549784_cov_9.220532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 123313 28 100.0 32 ............................ ATCCATCGCGGTGATTACCAGCCCGGCGACGC 123373 28 100.0 32 ............................ GTCCTGAAAATGGGGTGGTATGGTCACGGATT 123433 28 100.0 32 ............................ GTGATGCACTCGATTCGGCTTTCCGCCTTTTT 123493 28 100.0 32 ............................ GAGATGCGCGGCGATTGCGCGGTCTGGTGCAC 123553 28 100.0 32 ............................ ATTCAATCGAGGCGCGTGGACGCAGGAACAAC 123613 28 100.0 33 ............................ ATGGAGCGGAACAGGAAATCACCAATCCCTGAA 123674 28 100.0 32 ............................ TTGAGTAGCGGGAAAGAAGGTGCTGTTCTGGC 123734 28 100.0 32 ............................ TACAAAACCCAGCAAGCGTTCGGCGCGTCTGC 123794 28 100.0 32 ............................ GTGAGAAGCAGCTCAACCGCGACATTGCCGGT 123854 28 100.0 32 ............................ AGCCTCTCTGGACGGCGCAGTGCCTAACATCA 123914 28 100.0 32 ............................ TCCAGCGCTTGCCCGCACAACGCCAGCAGCGC 123974 28 100.0 32 ............................ ATCCGGCAGACTCTCCAATCCAAAATTGAGCC 124034 28 100.0 32 ............................ CATCACTTTCAATTGCATCCTGGAAGAAACGC 124094 28 100.0 32 ............................ AGCATAAGTATTTGACGCTGCCAGTGGCCCGC 124154 28 100.0 32 ............................ ACTCACCGGTGTCAGTAGGCTTTATGCTCATA 124214 28 100.0 32 ............................ TCGGTCAGTGCGGCGATGCGTTCATCTTTCAG 124274 28 100.0 32 ............................ TGCACTGGAAGAACTGGATCAGGTGGAGTTGT 124334 28 100.0 32 ............................ GTATTGTATGGGCCATCTCGACGGTTGGAACG 124394 28 100.0 32 ............................ ATCCCATCGCGCGGAACTAGGTAGGCCAGTTT 124454 28 100.0 32 ............................ GTTAAATCCGTTAAAACTAAATGCGTCAGTAC 124514 28 100.0 32 ............................ AGTGTTTTTTCACCTCCCGACCTGCCTGCAAA 124574 28 100.0 32 ............................ TGCAACGCGCCGCTGAGGGTGATGCCCGGGAC 124634 28 100.0 32 ............................ GTGAACTTCGTGCAGATGGATTTGCAGCAATA 124694 28 100.0 32 ............................ TTCAAAAATGCTTTGCGCTGAAACTACGGCAC 124754 28 100.0 32 ............................ ATACCTGTGCCGGCGTTGAGTCGAAGCTACAT 124814 28 100.0 32 ............................ TTTGGCGTACCACTTGTGGACGGCAACCACCG 124874 28 100.0 32 ............................ AATCAACGGCATCACCGGCACCGAATGCCCGA 124934 28 100.0 32 ............................ ACTCGTTCGACCGCCACCTCAACGGGTGCACG 124994 28 100.0 32 ............................ GCTGTTTCCCACGTCGTTTAAACACGGTCTGT 125054 28 96.4 32 .......T.................... GAGTAAACGTGTGTAAGTTCCCCGCGGTCGCC 125114 28 100.0 32 ............................ GGTGCCGTCTGTTCTGTAGCGGTAATCATCGG 125174 28 100.0 32 ............................ CTGCGCGTCGATAGCCAGGAAATGGCGATGAT 125234 28 96.4 32 ....................A....... TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 125294 27 85.7 0 ............CC......-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGATTAAAGGGTTACGGGACTATGCCAACGTGTCGCCCATCCAGACAGTGCCTGCGGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGAATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCTCGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCATTTATTGCCTTGAAAAGTCTCTCCACCGGACAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTTTATGGGTTAAGCGTGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGGTAAACCAAGGTATTTACCTGTTGTTCTTTAATAATCAGCTTGTTAGTGATTTTTTCGTTCA # Right flank : AAGGAGGGATAAAACTTTACCGACACCTGTTAACCAGTAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGTTGCGCCAGACGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGTATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCTTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //