Array 1 505884-506888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOE01000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0205 NODE_2_length_734790_cov_39.352903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 505884 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 505945 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 506006 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 506067 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 506128 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 506189 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 506250 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 506311 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 506372 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 506433 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 506494 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 506555 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 506616 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 506677 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 506738 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 506800 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 506861 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 523157-525199 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOE01000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain HIY0205 NODE_2_length_734790_cov_39.352903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 523157 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 523218 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 523279 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 523340 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 523401 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 523462 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 523523 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 523584 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 523645 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 523706 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 523767 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 523828 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 523889 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 523950 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 524011 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 524072 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 524133 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 524194 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 524255 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 524316 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 524377 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 524438 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 524499 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 524560 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 524621 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 524682 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 524743 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 524804 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 524865 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 524926 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 524987 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 525048 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 525109 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 525170 29 96.6 0 A............................ | A [525196] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //