Array 1 191500-193302 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMVI01000001.1 Streptococcus oralis strain KLC05 D8850_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 191500 28 96.4 33 ............C............... CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 191561 28 100.0 33 ............................ CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 191622 28 92.9 33 A...........C............... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 191683 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 191744 28 92.9 33 ............C.......A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 191805 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 191866 28 89.3 33 A...........C........A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 191927 28 92.9 33 ............C.............T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 191988 28 92.9 33 ..............T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 192049 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 192110 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 192171 28 89.3 33 ............C.T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 192232 28 96.4 33 ............C............... TGAACAAGACAAGCAAATCAGCAGTCTAGCGAT 192293 28 92.9 33 ............C......A........ TGAATGGTATTATCTCACGAATGAAAACGTTGA 192354 28 96.4 33 ............G............... CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 192415 28 92.9 37 ............C........A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 192480 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 192541 28 96.4 33 ............G............... TGGTATCGGACAAAAATGATTGCTGGCCGTAGC 192602 28 96.4 33 ............G............... CATTCAAGATGGTGTGAATACATTCGTTTACAT 192663 28 92.9 33 ............C.T............. CGGTGCAGTCAGCATCCTTGTTATTTTGGCAGG 192724 28 96.4 33 ..............T............. TGGTTTATCGAGCATAAAAATGAACCAAACGCA 192785 28 100.0 33 ............................ CTATTCAGCGAATAAAGACGATAGCATTTTATT 192846 28 96.4 33 .......................T.... CGAGATAACTTGTCATCTCAGCTTCAAGTTCTC 192907 28 100.0 33 ............................ TGGTCAAGACTGGGCGCATAAGTCAGGGTATGA 192968 28 100.0 33 ............................ TAGACGTGTAGTTGATGAATTGAAGAATGAGTT 193029 28 96.4 33 ............C............... TACATCCACCCCAGTTTTAACAAGTCCACCAAC 193090 28 92.9 33 ............G..........A.... TAGCTTGACCGTGTACTCATTTTTCAAAATCGG 193151 28 92.9 33 ............C.......A....... CGAAGATAAGACTATTTCTGTTACTGACAAGGA 193212 28 89.3 33 ...........GC.T............. TAGGATATTGATACAGCCTAGTAGCTAACACAA 193273 28 85.7 0 ............G............CTA | AT [193295] ========== ====== ====== ====== ============================ ===================================== ================== 30 28 93.7 33 GTTTTTCCCGCATACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ACATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTGTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAACTCAGATTATCGTTTCTATCGGGCTGGCACAAAACTTTGCGGGTCTGAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGCCACATGAAATTGCAGGTCAAATCTCTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCTCCTCGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [22-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 457375-458927 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMVI01000001.1 Streptococcus oralis strain KLC05 D8850_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 457375 36 100.0 30 .................................... TTGCTGACTAGTTCGGACCAATTTGCAACA 457441 36 100.0 30 .................................... ATTGACGCCCTTATTGACTACGAACTAGGA 457507 36 100.0 30 .................................... TTTCAGACAGCTGGACAGGTCTAAAAGGTG 457573 36 100.0 29 .................................... CAAGTGGGCAGCTAACCAACTAAAGGTCG 457638 36 100.0 30 .................................... ACACCAAAAAGGTGCATTTGGTAAACCACT 457704 36 100.0 30 .................................... TTAAAATGAACAACTCCGTCAAGCGTTTTT 457770 36 100.0 30 .................................... GAAACGTGGCGACACTAACAAAAATCGCTG 457836 36 100.0 30 .................................... TTCTCAATAATGATATAGAATGTACTTATT 457902 36 100.0 31 .................................... CTGTTAAGAAAGTTCCGTCACAATAGAAACT 457969 36 100.0 30 .................................... GATGGAAGAAGTTATTATGGCTACGTTGCC 458035 36 100.0 29 .................................... AATTTCTGCGCCTTGATTATCAGCCTTAT 458100 36 100.0 30 .................................... GATCATTCCAATTAAAGTATTAACTGGTCC 458166 36 100.0 30 .................................... GCTCGTCACCGACTGCGTCTTCTTTGTCTG 458232 36 100.0 30 .................................... AAGGTTCTGTTTACAGTTTTATCATTCCTG 458298 36 100.0 30 .................................... TTCTGCAAATGTTTCATCAATATGATTTAC 458364 36 100.0 30 .................................... AGCATTGACTTATTGACTACACCTTCGACA 458430 36 100.0 30 .................................... TCATCCATGATATGTTCACAATTTGGATGC 458496 36 100.0 30 .................................... CCTGTGCTTTTTGTTTTGCCAAAAAGTATA 458562 36 100.0 30 .................................... AAAATTCCTCGAAGGGTTCAAAGCTATTAT 458628 36 100.0 30 .................................... ACCGAGGTTACACCCTCCAAGCATTTCCGA 458694 36 100.0 30 .................................... TATGAAAAGAGAGGTCTCTATGATTTGGAA 458760 36 100.0 30 .................................... TTTTTTAGATGTTTGTCTAAAATGAAAGCA 458826 36 100.0 30 .................................... ATAAATCGGGCGTGCACATTTATGGTACAT 458892 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAGTAACTTACTCTATATAGTCTCATTTCCTTCAAATGAGGGTTATCTTCATGTAACTAAAGAAGTACTAGAGGAAATCAATATCGTTTCCGATTATGTAGATCATTTTTATTCCTTAGAATTTATGTATGAACGATTTATTAATCAATATCCAATAAATCAAATACCTGATGAACAAGACTTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCTGATATTCTTCATATGAGTTTATCTATAGAAGATCAAGTAGCATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCGGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CAGGCTAAATTGGATCCAGGATTAGCAATTGGAGCGAAAACGCTCTCTCTTATTTCTTACAGATTAGCTCCCCAGTATGATATAATGTCATTTAGAAGAAACCAGAGAATATAGGAGTCGAAACGATGCTAGCTATTTGTATCGATTCTATATGTGACAAGACAGGAACCTATAAGTTGTTAAGAAATTATTCATCCTTACCTTTCTCTTTAATCCAATCCAGAATAAAAGATCATGTCACGGTAATAGAAGTAGATATGTTAGATTTGGACGAATTGAAAAAGGTTAGAGCCCTCATCCATGAGTTGAGTGCCATTGGAACTAAGGTTACGTTGAGAGATTCGACTGGTATTATCACCTTAGAATTTTTAAATAATATTATTTCTACCTTCGAAGAAATTGTGGCTGAAAGAGAAGAACTGGATGCTCTGATGTTTGAGGGGGAAGAGTGATTGTCACATTTTCCAGTGAATTATACATTCCCAAGTTAATTTTTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //