Array 1 114279-113395 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP015030.1 Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 114278 29 100.0 32 ............................. GTGACTATCGAGCAAAACAGGGGGATTAATCC 114217 29 100.0 32 ............................. AGTGCCCCTTGAAATACCCATGATTACCAGAT 114156 29 100.0 33 ............................. CTCCGGCGTGAGCATTCTGTTATGCGCAAGAGC 114094 29 100.0 32 ............................. TAAGTACCGCCCAAGCGGGTGAGCAGTGCCCG 114033 29 100.0 33 ............................. ACTGGACTGGCTGCACGCGAGGCTGCCTAGGGC 113971 29 100.0 32 ............................. TTTGAGAACTAAGGGAGATCGGTCATGAAACA 113910 29 100.0 32 ............................. CAGCCAGTGGGTGACAGAATGAACCTGCCCCG 113849 29 100.0 32 ............................. GGTTCCCTGGATTCCCACCGGCACCGGAATCC 113788 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 113666 28 75.9 32 ..G..C......C-..TA.....A..... TCCTGTAGCGCACGTCGCGAAACCGCAGCAAC 113606 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 113545 29 100.0 32 ............................. TACACGTCAGCTCGCTTTCAGCAGAGGCCGCA 113484 29 93.1 32 ..G...............A.......... GGCTGTGGGGATGAGAAATGAGCAAGCGCGAA 113423 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 14 29 96.1 37 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTACTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGAGTCCATATTGGGATCGCAGTCTGCACAAGCCGGCGCTTGTGCCCACCAGTTTGGCTTAACCATGCAAGTTACCAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : GATTCTGACGAACGTCATATGAGTCAGCCGATGGGTTCCCCGCATGTGCGGGGGGTGAGGTTGTTGGATTCTTTGCAGGTCAGCGTTGACACAGGTCTGGCTGACGTATAGCTACACCAACGGATCAGGCAGGAGCAGTACATGCACCCATCTATCGGTCGGCTAAACGGTGGCAAGTTCTACAGCTACCTGAATGGCTATCACGCCGAGCCCTTCGTCGGCTCACTGGAAGAAGTCGAAGTAGCGATGGGCCTTCGGACTCAACCGACGCCATCACCTGCTGAGCCCGCCGCTGCCAAACGCAAGTGCTTCGACGTGACCATGCGCTTTCAGTACCCGGCCTGGGACGAGGTTGATGGGATCGTGTATCGGTCAATCGAGGCGGACAGTAAAAGCGAGGCGAACGCCATGGCCAAGAGGATGGCAGACCAGGATGGCCACCTCGCAGGCGGCAAAGGGCGCGTGACGTTCAGTGCATGCGAGCAGTAACCGCCTAGCTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //