Array 1 190936-192428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUN02000006.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0203 NODE_6_length_316782_cov_23.020991, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190936 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 190997 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 191058 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 191119 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 191180 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 191241 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 191302 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 191363 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 191424 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 191485 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 191546 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 191607 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 191668 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 191729 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 191791 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 191852 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 191913 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 191974 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 192035 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 192096 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 192157 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 192218 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 192279 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 192340 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 192401 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208564-209264 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUN02000006.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0203 NODE_6_length_316782_cov_23.020991, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208564 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 208625 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 208686 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 208747 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 208808 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 208869 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 208930 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 208991 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 209052 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 209113 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 209174 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 209235 29 93.1 0 A...........T................ | A [209261] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCAGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //