Array 1 604746-605176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJY010000001.1 Campylobacter coli strain 18QD2YX29C 1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 604746 36 88.9 30 T............G..........GT.......... CTTTTGTATAAACAAGTTCTATGATGTAGT 604812 36 100.0 30 .................................... AATAATTTTAACTGCAGTTATAAGAAGTGA 604878 36 100.0 30 .................................... TATTTTTATAATAATTAATTTATTGGCAAT 604944 36 86.1 30 .......T..C..G..........GT.......... AAACAAGCTATAAAGCAAAAATTAGGTGTT 605010 36 100.0 30 .................................... AAGAATTGCTCTGATGAATATAAATTAAGA 605076 36 100.0 29 .................................... TATTAATTTAATATATATTTTGAGTATGC 605141 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Left flank : TGGTGAAATGCAAACAAAGCGATGAAGTTTTTCAGGTGTTTTATAAAAAAGATGGGAAAATAAGATTGCTTAGAGTTAGCAATGTGCAAGCTTTAAATCATTTTGATAAACTTAAGGGTGTAATGACAAAAATAATTTTAGATAGTGGTTTCAAGCCTGATGAACAATGATGTCCAAATTTCACAAATTACTAATATCCCTTATTTCACTATTAGAGACTGGAAACAAAAAAAAGACAATTGGAGGGGAAAAATATATCTTTTTTTAAAAAACACTAATCAAGAAGAATTAAAAGAAATATTTTCAAATTCTATTAATTCTTCTAATACAGGTTTAAGTGATTCTAAAATTGCCAAAATTACAACAATTCCATTGCCAACGCTAAATACTTGGAAAAAGGATAAATCAACTTATAGAAAGAAAATCTATGATTTTTTGAAAAGTTGCGATGAAAGTAGATTAAGAAATATTTTCTTATGAATTTAAATATTTAAAAGCTA # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTATTTTTTGAGCAAAAATATCTAAAACCATTTACGCTCTTCGTTTTCAATTAAGCTTAATTCACCTGAAGGACTTATACTGTATTTTTTAATTTCAAGTATTTTTCCTACCACTATAGATTCTTTATCATTTTTTCTAAAAACAACCATTTCATCTTCACTAAGGTTGTGATAATTGTTGTCGTGTTTTTTATAGGTTATTTTACTTCCTGAAGTATTAAAACCATGATAATAACAAATAATAGACTCTTTCATACCCTTTATTTTTACGCTAATTGGAGTATTTTTATACAATGACATACAAAAGTTATAATTTTCATTCATTTCAATGCCTTCTTTGGTTTCTCCATTTGATGTAGTTGCAGGGGTTTTATTTGGAAGTTTTTTTGTAGAAAAATCTGCTTTATAAATAGACACTGCATGGAATTTATTTTCTTTATCTACAAATAAATCAGTTCTTA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTACATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1635461-1636222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJY010000001.1 Campylobacter coli strain 18QD2YX29C 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1635461 36 100.0 30 .................................... TAGTAGCTAAGAATAAAATAAGAAACACTG 1635527 36 100.0 30 .................................... GAACTAACGCTGTTATATCAAATCTAGTTG 1635593 36 100.0 30 .................................... AGTTTATCAGATATATTTTTAAGGTTTAGA 1635659 36 100.0 30 .................................... GAAAGCAAAATCACAATAGCTACATTTAGC 1635725 36 100.0 30 .................................... AAATCAGAACCACACTGTTTATCATCTTTT 1635791 36 100.0 30 .................................... TAACATTTTTTCTTAATGTAGGCAATATAT 1635857 36 100.0 30 .................................... AATTGTGATAATATATTAGAAGTCCCATAT 1635923 36 100.0 30 .................................... AAATAGAATTAATTCCAAACAATAAAGCAA 1635989 36 100.0 30 .................................... TGTTTTTATTATAGGAGATACAGGTGCAGG 1636055 36 100.0 30 .................................... GATACAGGATTAATTGGAAAACCTGTGCCA 1636121 36 100.0 30 .................................... AAGGAAATTATAAAAGATGTAATAGCAAAA 1636187 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AGCCGACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTAGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTACCAAAAGAATGTGAAATTTTAGAAAATAAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGG # Right flank : TAGATATTTACCAGATAATGAAAATTTAGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //