Array 1 782482-781005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026700.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR_0031 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 782481 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 782420 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 782358 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 782297 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 782236 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 782175 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 782114 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 782053 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 781992 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 781931 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 781870 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 781809 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 781748 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 781686 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 781583 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 781522 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 781461 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 781400 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 781339 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 781278 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 781217 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 781156 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 781095 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 781034 29 96.6 0 A............................ | A [781007] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 800229-798614 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026700.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR_0031 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 800228 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 800167 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 800106 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 800045 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 799984 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 799923 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 799862 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 799801 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 799740 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 799679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 799618 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 799557 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 799496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 799435 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 799374 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 799313 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 799252 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 799191 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 799129 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 799068 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 799007 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 798946 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 798885 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 798824 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 798763 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 798702 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 798641 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //