Array 1 19956-20343 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000019.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19956 28 100.0 32 ............................ ACTGAGTGCAGCGTTTTGCCATCGTATGACGG 20016 28 100.0 32 ............................ CAAATCTGTATTCGTATAAAGGGCATGATTTC 20076 28 100.0 32 ............................ AAATACAAAAATTATATAGACACGTATAAACT 20136 28 100.0 32 ............................ AAACAAGGGGCGTGCTAATCAAGAATAGCACG 20196 28 100.0 32 ............................ TCAGACGAACGCCCACCTCGAATATGAAAAGT 20256 28 100.0 32 ............................ TACGACTTCAATGGTCCGGGACGTAAGGTCTA 20316 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTAAACGGAGTTTCTAATTGGGGAATCAGTTCCTGCAGCGTGGCAGAACAAAAATAAGCGGCACCGTCAATAATGAAAAAACTGAAAAAAAGGCCCCAGAGAAAAGGAGCAGCCTGTTTAAACCCTACTTTCTGGCTGACCGATAAAGACATGAGATTATTCGGCCCTGGTGTAAAGGACATGCCTATACAATACATAAGAAATGCGGCTAATTCTGACATCATACAAAGCACCTCGCATCAGATAAGATATTTCATCAGTAATCCTGATTTATCCGTTAAAACAATTATTATTTTATTATATATTTTCAAGAGAAACAATACATGCTGTATCGCTTCTGTTGCACTATTTTTTTCGGCGTGACTTTTAACCAAAAATTTTTCCTTTGCTCGCAGACCTTAGAAATCACAGGATTTTGACAAGAGCCCGAAATTTTGGTTAAATAAAAGTAACCTGTTGTGAGCTTAAGCAGGATGAGGATATTCGTGCAAAAGACTCC # Right flank : AAACAGAAACGACAAAACCTGTTTATGCTACAGTAAAAATACTTTCGTAAAGGCGTGCCCGTGGCGCGCCTGCTATGGACATGTAGAAATACACTAGGACGTGTCTTCTGGCACAGCTCCTATGCATAAGAATACTGGCCGTGTGTTTTTTATCGCGCTTTTGATGACGTAATTAACGGATTTACACTAAGGATGAAGGTGATGTCATGACAAGAGCAGAAATTGAAGCATCGAATTTAAAAGTCATTCTACATTCTAAGAGGGCGAATATTTATTACCTAGAAAAGTGCCGAGTTATGCAAAAGGATGGGCGCGTGCTTTATCTGACAGAGGGGAAGCGGGAAAATCAATATTGGAATATACCGATTGCCAATACGACGGTACTGCTGTTGGGGACGGGTACATCCATCACGCAAGCTGCGATACGGATGTTAGCTATGGCTGGCGTAATGGTCGGGTTTTGTGGTAATGGTGGGACCCCATTGCTTTCGGGTGTAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28955-30425 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000019.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28955 28 96.4 33 ........T................... ATAATATAACCTCCTAATGTCGTAAATATTCTT 29016 28 96.4 32 ........T................... GTTTCAAGGTCCTGCTGACTGACACCCGTTAC 29076 28 100.0 32 ............................ GATACCGCGGCGGCGTCTTTGAACGGCATGTT 29136 28 100.0 32 ............................ TATAAACCTATGGCTATCCAGTATGCATCCAT 29196 28 100.0 32 ............................ AGAACTCCGGACTCGTATCGGACGTACAGAAT 29256 28 100.0 32 ............................ TTGTCTAAGTCTTGAAACCCGCATGGTTAAGC 29316 28 100.0 32 ............................ ATGACGCTGTCCGGCGTATAGCTTACATACGT 29376 28 100.0 32 ............................ CCGTACAATTTGGGCAGGTCTTAGTAACAATC 29436 28 100.0 32 ............................ TTGGTAATTGTAATTTTTGTAGATTTTCGTTG 29496 28 100.0 32 ............................ ACTAATATGGGTATCACTCGCTCAACGTTGTA 29556 28 100.0 32 ............................ TTACTGTATCCCAGATGGGTGGCAATAAATGG 29616 28 100.0 33 ............................ TGCAATCTAAGTAGCCCTTCTTTTGTCAACCAC 29677 28 100.0 32 ............................ TAGACAAAAATAACTTTTGAAAAAACGTACAT 29737 28 100.0 32 ............................ TTGAATGTTCCGTCGCCACAATCTATACACTT 29797 28 100.0 32 ............................ AATGATTATAGGCTGTACAGAAAAAGCAATGG 29857 28 100.0 32 ............................ ACTCAGGCTATCAAGAAATACGGTGTCCGTGA 29917 28 100.0 32 ............................ AGCTGCATCAGGAATTCATAGAATCTCTTAAA 29977 28 100.0 32 ............................ TCGATTCAATTGATACGTATTTGGCACTTTCA 30037 28 100.0 33 ............................ TTCAGATTCTTGAAGGTGATCTGACGGGTCTTT 30098 28 100.0 32 ............................ TATGAATATAGTCTGGTGCAGGCCATCAAGGA 30158 28 100.0 32 ............................ ATAAAACAGGAGCAACGGCAACATACATAACA 30218 28 100.0 32 ............................ TGAACGGCCTGATAATCTTCTGGTCTGGATGA 30278 28 100.0 32 ............................ TTCCATTCATCCCAATACCGCGTAAATCGTTC 30338 28 100.0 32 ............................ GAAAGGCAAGACGGTATCGTACAGCATCCGCA 30398 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.7 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACTCCAGCATTTGAATCTGACTGAGGCATTGAAGCGCTTTACACCAGATTATGTGAGAATCAAAGCCATTCGTCCAGTCCCCGTCAGAGCATGCAAAGGCTTCGTGACGTACAGCCGCTATCAGCCAGAGGGCACAGCGATGCGAAAAGCTAGACGCTATGCAAAACGGCACGATATGTCGATAGAAGAAGCCCAAAAGCTTTTCCCGGCACTTACTCATAAGGTTCAATATCCGTATATCCAATTGGAGAGTATGACCAACCATCATCGTTTTAGCCTGTTCATCCAAAAAAAAGAAGCGGTTGAGCAGCCCTGCGAGGGATTCTCTGCATATGGGCTCAGTACTGAAACATCGGTCCCTGACTTTTGACCAAAAAATTTTCCGTTGCTCGCAGGCCTTGCAAATCAAGGGTTTTGACAAGTGTCTAAAATTTTGGTTAAATAAGGGTAACCCGCTGCGAGCTTAAGCAGCATAAGGATATTTGCGCAAAAGACTAC # Right flank : AATTTACTCATAGTTTTTACCTCCATAAAACATGTTAACCACAATAAAAGCGAAATGTGTGCATATGAATTATATCGCATGTATATATGGAGGTGCTGATTATGGCTGCCAGCCACAATTTATACTGCTGCACGTGACATGGTTGAACTGTCAACTATGTCAGCGGAGGTCGGGGGAGAGGGGATAGTGGGGATGGGAATGGCGTATTTTACCGATATAAGATTGACGCTTTCCGTAGTGTTTCTTTATATTGAGTAGGGAAATCCAGAATGATATAATAAATTTATCTATTATACAGACACGACTATATCGTATGAGTCCGTAAAAAATACGACATGGAATCTGGATGGAACGTCGAAGGTGACATATATGATAAATACAATGGATATACAGAGAACAGGACTCAGTGAAGAGTTAATAAAAGAAATAAGTACCATTGCCAGTAAATGGGGAGTGCAAAAAGTTATTCTTTTTGGGTCCCGATCACGGGGAGATTATGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 85-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000026.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 85 32 100.0 36 ................................ ACTGGTAAAATCCCGCAGAAAAAGCGACAGGAAAAT 153 32 100.0 35 ................................ TGAAAATGAAGACGTATTAGAGCCATTCTGGGTTT 220 32 100.0 37 ................................ TTAAATTAAATGATGAAGAATATTATTGTTTATTTTT 289 32 100.0 37 ................................ GTACCTGACCGCCGTCATGAAGCTCTGACGCGATAGT 358 32 100.0 37 ................................ TGCGAATATTTAAATGGTAAAGTACGCGGATCTGACG 427 32 100.0 35 ................................ ATCTATAACCGGGATGGAACGCATAAAGTCGTGAC 494 32 100.0 36 ................................ CGGGATATCCGGGATGGGCTTTTTGTTTATCCATTC 562 32 100.0 35 ................................ ACTTCTATTTCTTCTCCGTTTTCCAACTTTGAAAT 629 32 100.0 34 ................................ CAAGCTGGACATCTACACTCCGCCGATGATTGGC 695 32 100.0 33 ................................ CTGGACCTGCATCCAAATCCGGACGATTCCGAC 760 32 100.0 36 ................................ GGGTATTGGCTGATAAAGTTGCCGTCTTTGTCCTGT 828 32 96.9 35 .......................T........ ACATCTCAGGGCACGCAGATGCTCGTCCAGGCTCA 895 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.5 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : ATGGAAAACCTCAGTTTGACTTGTCCTATTTATATGCTAGCACCAAATAATCAGATCGTCGAACACGTCACCCAACCCGCCTTCG # Right flank : TAAGACCAGCGATATTATCGTGGAAAAAGACGAAGAGTCGTGCCCTTCATAGGTGTATAAATTCTGTATAAAAGTGCATCCTATATGAAGAAGTGAATCGAGTCTTAGTTTTATCTTTTCAATGGATTATCATATATAATAGTTACAAATTATAGGTATTTAAATATGTGAAAAGAGGTATATTTTATGGGATATGATGAAGATGATTTTTTGATGATTTCGGGTATACAACATTTTTCATTTTGTCCACGGCAATGGGCTTTAATCCATATAGACCAGGTTTGGGATGAAAATATTAAGACGATAGAAGGTAATATCGTCCATGAAAATTGTCATAATCCGGATTTTGTAGAAAAACGTGGCGAATTTCTTATTTCTCGCGGAATCCGGATTGCTTCGAGGACTTTAGGTGTAACCGGACAGTGTGATGTGGTGGAATTTCACCGGGGCGATAATTGTGGAAGTTGTTTGTATGGACATGATGGCTTATGGATTCCGTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 434-1412 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000053.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 434 32 100.0 35 ................................ GTTTTTGTTGAATTTTGTGGCCTGATTCTTTGTTC 501 32 100.0 35 ................................ TTCGCTTCCCAGTCCATTAGGGTTAATTTATCAAA 568 32 100.0 38 ................................ ACATTGTCACTGACGGCGAAACGTTATGGGACATTGCC 638 32 100.0 37 ................................ ATATAGTGCAATATGGTCAGCGCGTGGAATGGTTCAA 707 32 100.0 37 ................................ GATATTATTGGACTCTTCATGGTTATGAAAATGGTAC 776 32 100.0 34 ................................ ACAAATGTAATATCAAATATGGTGAGGACCGGCA 842 32 100.0 35 ................................ AACGAAGGTCATGTATCACTAGCCAAAATTGGAAA 909 32 100.0 36 ................................ AATGTCACTTCTGCATGATGAGAGTAGACAGCGGGG 977 32 100.0 33 ................................ TTTCCCGTACGCGTCGTTGATGTACATAGCCGT 1042 32 100.0 35 ................................ TACTTTCTTCGCATTTTCTGCCAAAAATACACTAA 1109 32 100.0 35 ................................ AGCTGTTTCGGGATGGCCTGGTCAAGCAGAGCACT 1176 32 100.0 37 ................................ GTATTTCCGGAGCACGCAAGGGTCCGGACAGTATAGA 1245 32 100.0 36 ................................ TTTTCGGTCGTTCCGCCGGGAAAGGAGTTTCCATGT 1313 32 100.0 36 ................................ GCGTATAAAAAATAGCCGTTTATCAGAACTCTGGGA 1381 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 100.0 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TGATAGAAACCTCAATTTAACTTGTACTCAAACTTGACATAGGACCAGCCAGAGGGAATATGGCCGTACGCGAACTCATTGTTTTCAAGCATGATAGTGAACTGGGGAATGCCCCGGCCTATAAACTTTTTGACACTATTCATGTCCAGAAAAAAGATGGCGTCATTGCTCCCAGAAACTATACGGACTACGATATCACTGTAGATGAAAGTAAAATCCCGGAACATGTTACGTGTACCCGGATGATTTAACCAAGAGAAAAAGCGGTGCGAAGCAGAATCACACATAAAATATATCGGAGCTTCGCACTCGTCTTGATTTCTATAAAAATGAGCAATACCCGGATAATTGACTCAAAAATTGAACTGCCTTTCAATCGGCTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCCG # Right flank : TGGTCCTATGTCAAGTTTGAGTACAAGTTAAATTGAGGTTTCTATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18218-17655 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000017.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18217 36 100.0 30 .................................... CTGTCGCAAGTTTTTGTGCGTATAGACGCG 18151 36 100.0 30 .................................... TTCGGCTGTGCGATACTGTTTCAGCAATTC 18085 36 100.0 30 .................................... AGCATTGCTGTAGGCATAGAGTTGCTCTGC 18019 36 100.0 30 .................................... TCTCAGCATGTCATACCGTAAGATAGCCTG 17953 36 100.0 30 .................................... CCATACGGAACCATATTTATTCAACGTATG 17887 36 100.0 30 .................................... CGTAACAGCACCGGCCTGAATCATCCCTTT 17821 36 100.0 30 .................................... CTGGTCTTGCGTGAAATCCGCACCACTCTT 17755 36 100.0 30 .................................... TCGGTACAGCATACAACAAATTCAACGGTG 17689 35 83.3 0 .........................AT..-.GT..G | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 ATTATACCTTAGCGAGGAATATTAGGGAACTACAAC # Left flank : GTCTTGTTCGTTGCTATAAGGGAAAAGAGTCAACATTGCTTTTGCCGGAGCTTATGCCTTTGCAAATCCATTCATATGAGTAAATTTATGCGCTTATTGGTTATGTTCGATTTACCGGTCAAAACAAAAATGGAACGCAAGGCGGCTAATCAGTTCAGGCATTTTTTATTACATGATGGATATTATATGATGCAATTTTCAGTTTATGTTCGTATCTGTAATGGGAGAGATGCAGTAGAAAAGCATCGTCAACGCATTTTACATCAACTCCCCCCGCAAGGATCGGTGCGGATGTTGACTATTACAGAACGACAGTTTGAGGCGATGGAAATTCTTTGTGGCAGGAAAATTCCGGAATTAGATGAAAAGCAACAACAAAATACTGTGATGATATTATGAAAAAATCGCCAGCAATGGCGATTTTTTCATGTTTGTTTTTCGTTTTTTTTGCAGAAATAAAGTCGTTGAAGTGAGTTGTTTCAACGACTTTATCAGATAGT # Right flank : GATGTGATAGATTTATTTAATTGCATCATGTCTTGGTGCAGGAAACGTAACATGTCTGATTCTTTTAACTATTTTACTTTAGATAAAAATTGTCTGTCAAGTCTTGTTATTCTTACATATTAAGACTAAAATAGGGCTATCAAATTGAAAGGAAGAGGATAGGAGAGAAAACATATGAAACATTTAAAGATTGCGTACAGTTTTGACGTGCAGTATTATTTTGTGGACAGCGACCGGGAAATCGTGCCTGTGGAACAGACAGATTTTACTGATGTGGCTGTCGCCGTTTTATCGGATCAGGATTACGACTACATTGATAAGATTGATGCTACGGGGTTTGGTGTCCCTATCATGGTCATCATGCCAAGTGGGGAAAAGCTGCCGTCCCATTATCTGGACAAGGTAGATATGGTCCTATCGGAAGAAATGGTCAATAAGAGCCGCTGCATTGAAACGGCAGAACGGCTGGCCAGTAATTATGAACAGACCGTATTACCTCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCTTAGCGAGGAATATTAGGGAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 64002-64531 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000006.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 64002 23 100.0 47 ....................... CAGACGCTGGGGCATATTTGGCAAGCCCAAAACGTGTAAATTACCTT 64072 23 100.0 51 ....................... GATGCACTATCATAAGGGAGGCGGTAGCAAGTCAATACCGTAAATTACCTT 64146 23 100.0 51 ....................... AAGTGTGTGCAAGCGGATATTTATATTTTTCGTTCTTTTGTAAATTACCTT 64220 23 100.0 42 ....................... TTCATATTGGCTTTAAAAGCCGTTTTTGTTGTAAATTACCTT 64285 23 100.0 51 ....................... AATAACATATGCATTTTCTAATAACATGTTGTACCTGCCGTAAATTACCTT 64359 23 95.7 52 ........C.............. TCTTCCCGGTCAGGTGACCAGAAGAACATCTTATGGTCTTGTAAATTACCTT 64434 23 95.7 51 ........C.............. AGATGAGATACATATACAATCATTGTCTAGCCTCCTATTGTAAATTACCTT 64508 23 87.0 0 ........A..........G..T | C [64516] ========== ====== ====== ====== ======================= ==================================================== ================== 8 23 97.3 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : TAGACGGATCGCCATGGGGACATCAGAAAGCCTTGCAGATCCAGTCTCCAAAAGCCGGACTGATTACCTATATCGATCTCAATGAAGAAGGTTATATCCAGACGATGCACGAAATCTGGCAGTGACCGTGCAGGAAGGAACGCAGCTAGCAGGAAAGGCAGCCAGCCGCAGTTAGCGGCTGGCTGCTGGCTGCTAGAAGTCCGCAGGCTGTGTTACGCTGATATAGTTGCATTATCAACTATGTTGGTAAAGGTCAGGATGGCGGTGTTTTGGAGGAGTAAAGAAGTGCAATTTTGAAGCAGGATGTGGTATAATAAGGACAGATTTGCAAGGAAATCAACAAATCCGCCCCGATATGGCAACCATGCGGGGTAGCGGGAATTCTGAAGATGAGTATCACTGAAAATGTTATACAATCAAGAAAATCAGAATCCGCCCCGCAAACCGCCTCATAGACCTGCATAAACACAGGCTTCGTAAGGGGTGCTGTAAATTACCTT # Right flank : TCGTTGAATTTATATACGTTTTGTTTTGCATTAAGATTTGATGGTATTTCGGGTTTTCTTTTTAAAGAGGTGATTGTATGAGTTTTGCGTATATTACGGAAAAAGGAGCTATCATCACACATAAAAACGGACGGTTCATTGTGGGACGGAATCATGAAACGCTCCTTGAGATCCCTCAGGAAACGTTGGAGGGACTCGTATTGATTGATACAGTACAAGTCACTTCACAGGCGATGGTAACGTTGCTGGCATGTGGAATTCCCGTCACCTGGTTATCCTCTAAAGGTTATTTTTTTGGCAGGTTGGAATCTACCAGCCATATCCGTATATTTAAACAGCAAAAACAGTTTCTATTACAAGACCAGCCTTTTAGTTTTGAACTTAGTAAAAAGACCATTTCAGCAAAAGTCCATAATCAGATTACATTACTGCGCCGCTACAACCGGGACCGTAATATTCCAGAAGTAAATCTCCATATTCGTAATATCATGACAATGCGA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : GTAAATTACCTTAATCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 74077-74913 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSFA01000006.1 Megasphaera sp. AM44-1BH AM44-1BH.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 74077 23 100.0 50 ....................... CTCAATTCCCTTTTTGCTATAAAGGGAATTTTCTACTAGTAAATTACCTT 74150 23 100.0 51 ....................... GTACAAGGCTTTATGGTCGATAGTGACGGCCTTGTACTCGTAAATTACCTT 74224 23 100.0 53 ....................... TTGATTTAAGGCTCTTACTATCGGGGGCCATCGCCGGCTTTGTAAATTACCTT 74300 23 100.0 50 ....................... TGGTAAGGTGAGTTCTTCGAACTTCCCTTTATGGAATTGTAAATTACCTT 74373 23 100.0 51 ....................... GGACTCTAATCGTAATCGATTCATAGTTTGCTTTGAGCCGTAAATTACCTT 74447 23 100.0 53 ....................... GTACGAACGACAGAACAAACAAAACAAACAAAATTACGAACGTAAATTACCTT 74523 23 100.0 49 ....................... AGGAGGAAAATAATATGGCTAAAATCACAGAAAATTCGTAAATTACCTT 74595 23 100.0 53 ....................... GGTGGTATGCCCATAATTTTTTGTGTTTTTTAATCCTGAACGTAAATTACCTT 74671 23 100.0 52 ....................... AATTTCTTTTGTTACTGCATTTTTTAAAACTGCTGTCTGTGTAAATTACCTT 74746 23 100.0 48 ....................... GGGACACGTCAACCGAGCAATGCAAGTACCTGCAACGTAAATTACCTT 74817 23 100.0 51 ....................... GAGGAAGGGAAGCGTACGCATACCAGTATTTTTTGCCACGTAAATTACCTT 74891 23 78.3 0 ..................TTTTT | ========== ====== ====== ====== ======================= ===================================================== ================== 12 23 98.2 51 AATCCCCGCAAGGGGACGGAAAC # Left flank : AACAAATATATAGATGAATTACGAAAATTACGGAACAATACGGCTCATGAAATAGTCAATGTATCAGCAGATACAGTAAAACAGCGGACCGGAATGAATCCATCGGATATTATGCAATCTTTCTGGCATCTGCTTTCTGTTATACTGGGTTTACAAGTAAATAAACAACGCAGTGCTTACAGACAACTCAACCAATGGATTGATCAATCTTTGTTGCCAGGAAAATGAGGTAACTATGTGGGTCATGCCGTTTCAGGTTGTTAACAGTTTTGTCGTGCTGTATCTATTTTTTATAGAAAGTATATGATATAATAAGGGCGGATTTTTGAGAAAAAACGCATAAATCCGCCCCGATGTGATAATCATGCGGGTTAACAGAGATTCTGAAGATGAGTATCACTGAAAATGTTATACAATCAAGAAAATCAGAATCCGCCCCGCAAACCGCCTCATAGACCTGCATAAACACAGGCTTCGTAAGGGGTGCTGTAAATTACCTT # Right flank : TTTTGTAATGGACATTACAATTTCCTTTTATGAGTGGTTGCTTTGATCCTCAAAGGGAAGTTACGTGTTGTATAGTTGAACTGTCAACTAATTTTACGGACCAGGAAAGGAGGGCGCATGCAATGAGTGATACGGCTATCCGGGAAGCGATGGATTATGAAAAATAATTTACCACCAATAACGAGCTGAAATCGGCCTATTGGGAGCATGGACGTACCATGCGTGACATTGCTTCGGCCCTTTACAGCCGGGAAAAGATTGACCAGGAACGCGGTGAAAAGGTTGGTGATAAAGCTGGGAGGCAGGCACTCAGTGCGTTGCTTCAAAAACTGCTGCAAGAAGGCAGGACAGAAGACATCAACCGCGTCTTGCAGGATAATGAATATCAGGAGAAATTACTGCAAGAATATCATTTAAAATTAGATTTTGTAAAAGGCCCGTAATCATGCGAATCTTTTTTATTCTGATAGATTTCACTGAGGTAAACGAATAATAAACGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //