Array 1 24291-23103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMIQ010000140.1 Escherichia coli strain MCE11 NODE_12_length_145062_cov_21.5923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24290 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 24229 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 24168 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 24107 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 24046 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 23985 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 23924 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 23863 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 23802 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 23741 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 23680 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 23619 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 23558 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 23497 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 23436 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 23375 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 23314 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 23253 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 23192 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 23131 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50876-49993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMIQ010000140.1 Escherichia coli strain MCE11 NODE_12_length_145062_cov_21.5923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50875 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 50814 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 50753 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 50692 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 50631 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 50570 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 50509 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 50448 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 50387 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 50326 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 50265 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 50204 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 50143 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 50082 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 50021 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //