Array 1 218648-216750 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 91 NODE_1_length_526636_cov_11.7068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 218647 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218586 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218525 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218464 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218402 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218341 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218280 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218219 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 218158 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 218097 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 218036 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217975 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217914 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217853 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217792 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217731 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217670 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217609 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217548 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217487 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217429 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217368 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217307 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217246 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 217185 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 217124 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 217063 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 217002 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 216901 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216840 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216779 29 93.1 0 A...........T................ | A [216752] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236546-234930 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 91 NODE_1_length_526636_cov_11.7068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236545 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236483 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236422 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236361 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236300 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 236239 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 236178 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 236117 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 236056 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235995 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235934 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235873 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235812 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235751 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235690 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235629 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235568 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235507 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235445 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235384 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235323 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 235262 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 235201 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 235140 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 235079 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 235018 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234957 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //