Array 1 30923-28922 **** Predicted by CRISPRDetect 2.4 *** >NZ_QREV01000041.1 Parabacteroides acidifaciens strain 426-9 Scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 30922 35 100.0 37 ................................... GGCTACCATCTTCTAATATCTATAATTCACTATTCAA 30850 35 100.0 33 ................................... AATATGTACGCTTCCAATACTTTATAATCAATC 30782 35 100.0 38 ................................... GGCTTTCAATCCCCAATAAAAGGAAAGGAGAAAGAGAA 30709 35 100.0 36 ................................... TGATACAATTCCAGATGTTGGAGCGCCCTGGAAAGA 30638 35 100.0 35 ................................... GCGTACTTGATGCACATATCCATTGTTTTCACAAA 30568 35 100.0 35 ................................... TTTCTTTGTTTTTTCCCTGAATGGTCAGATATTGA 30498 35 100.0 36 ................................... ATTCCAAGTCTTCTTATACGACTATGTTCTCCTATT 30427 35 100.0 34 ................................... ATAATTGTTGTTTATCGTACATACACGCTATTTT 30358 35 100.0 33 ................................... CAGAACATATTTGCTTATATAGCACATAATTCC 30290 35 100.0 33 ................................... ATAATAAATAATTAATGTTCTTAACCGAGCAGA 30222 35 100.0 33 ................................... TTGCTTTTTTCCTAACTTACTCATAGCAAAAAT 30154 35 100.0 35 ................................... GGTTTTATCGGGACCGACCGAGCACACAATGTCAG 30084 35 100.0 34 ................................... CTGATGTTAAATTTCTCATTACTGTATATTTTTA 30015 35 100.0 36 ................................... ACATACTCATTAAGTTTAATACCATAAGTTCCGTGG 29944 35 100.0 38 ................................... TTCTCTTTGCGGTAGGCACAATTATCGCCGTTGACGAT 29871 35 100.0 33 ................................... AAATTGTAACAACCTGCCGTCATAATATGCGGT 29803 35 100.0 35 ................................... AAATTCTCTCAAGCTTAGGCATGTTAACCTTGCTT 29733 35 100.0 37 ................................... AAGCAAGTGTGAACGTTGAACCTGCCTTATAATCCAA 29661 35 100.0 35 ................................... GTCATCCCCCAAATCTTGAATAAGAACCTCCTCTT 29591 35 100.0 34 ................................... AAGAGCTAATCCTGCAAAAGGTGAGTTCACGGAA 29522 35 100.0 34 ................................... GAATTTTCCGTTATCGGTCAAATAAACTGCCAAA 29453 35 100.0 36 ................................... CATTGACGGAGAAAGTAGCGCCATTGAAAGTTGTTT 29382 35 100.0 34 ................................... ACGGCATATACCGCAAAAATCATTAACAACAACG 29313 35 100.0 35 ................................... CAATTAAGCTAACAAGTTCTTTTTCTTCCATTTTA 29243 35 100.0 36 ................................... ACTGATAAACTCAGGTGTGTCAAATTCTGAAGAGCA 29172 35 100.0 35 ................................... AACATCCACCATCTCGGCCTTTTCATCCCCGGAAT 29102 35 100.0 37 ................................... AGACGAAGCTGTGTAAAGAACCATCCCTTTTCTGAAA 29030 35 100.0 37 ................................... AAAATTTTTAATTTATGTTGGTTGGCTGTTTTAACCA 28958 35 94.3 0 .....T..........................A.. | AA [28928] ========== ====== ====== ====== =================================== ====================================== ================== 29 35 99.8 35 GTCAGGGAGTATTCCATTAGAATAAGGATTAAGAC # Left flank : ATTTCGGATGAAATAGAAAAATTACGAAAATGGGGGTTATTGTAATAATTGAATAAAGATTTTTGATTTGCGAAAATTCTATTTTTAATATATGGTTGATTAATAGGTGAATATTGTAAAATGGACTTTGGAACTTGTGTGAAAAGTTTCGCAAATCTTTGTTTTCAGCATTTTAGTTGTTACATTTGCGAAAATGCAGTGTGAAGGCATTTATGTTCTTTGACGTTTTGCTTTAATAATCAGATGCTTATGAAATGTATTTTTAGGCGTTTTTCGCAAATCTCCAAATTAAACAAGTATGTTTTTAGATTTGCGAAATTGTAAATGTTTGATAAATAGATAAATGAGCATGAATTGAACCTTGTTTTGTTTGAAATCTCGGATTCAATTGGGTACATTTGCGAAAAAATAGTTATAAATGGATTAACTCCCTGATTTAAAGTTCGAAGTAGCAAGAAGAAGTTCAAGATAAAGAAGTCTAAAGTGCTCTCTGATAGAAT # Right flank : GATTGTTAACGAAAAATACGAATATGGAAACACAGAAGTCATGTTATTCAACATTGTGTACGGAAGCGTTTTTGTTTGAGGCGTGGAAGGCTGTTAAAAGCAAAAATGCTTCCGGGGGAATAGATGGGGTTACGTTAGCTTGTTTTGAAGATAATGTCCAGACATATATTTCAGAGTTGTCGGGTGAGTTGAGAGCTGGGATATGGTCTCCTGAACCGTATCTTAGCATTGAAATTCCTAAGAAGAAAAATGAAGTGAGGAAGCTGGGTTTGTTGTCTGTTAAAGACAAAATTGTGCAATATGCTATCAAAACTTTGGTAGAACCTCTTTTTGAAAATATTTTTGTTGATGCCAGTTATGGCTATCGTCCCAATAAAGGACATACGAAAGCTGTTAGGCGTGCATTGAACGAATGCCAGAAAAAGAAGAATAAATGGGTGTTGAAACTTGATATTGATAATTATTTTGACACGATCAATCATCATTTGTTGGCGGCCCGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGTATTCCATTAGAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 61090-59215 **** Predicted by CRISPRDetect 2.4 *** >NZ_QREV01000020.1 Parabacteroides acidifaciens strain 426-9 Scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61089 32 100.0 34 ................................ CTTAGAAAAAATTAAAGATGTCGATGAATTGAAA 61023 32 100.0 34 ................................ CTTCATTTTTTCAGGATCATATTGTACTGTCTTC 60957 32 100.0 35 ................................ TCCTATATGATTGAAGAAATGTGTCATTGATTCAA 60890 32 100.0 34 ................................ TTCTTCCATCGCTCTTACTCTTTATCTTTAAAAA 60824 32 100.0 33 ................................ CTATTGTACCAGTCGTTCCATTGTCTATTCCAA 60759 32 100.0 34 ................................ TTTAAAAGAGACATACGAAGCTCTATTTACAGAT 60693 32 100.0 36 ................................ ATAAACTTAGCTGCAACTTTCGCTTGGTCTGCTTGA 60625 32 100.0 33 ................................ AAATTCAGTATTGTATTCATCGGATAGCCTGTT 60560 32 100.0 36 ................................ ACCGATTCAACATCCGCAATGGCCTGATCGACACGG 60492 32 100.0 34 ................................ CTACCTGGAACACTAAAGGTTGCAAAAGAGGATT 60426 32 100.0 33 ................................ TATTCACCAGCCCAAGAACTGGAATCTTCAGAT 60361 32 100.0 32 ................................ ATTCCATTTTGCTACCTTGCTTATTTTTTGAT 60297 32 100.0 34 ................................ ATAGTTGGGGGATACCTGAATACCAATTATGTGA 60231 32 93.8 34 ........T...C................... ACTCTCTTGGTAATGGGATTTACTGGCAAAAAAG 60165 32 93.8 33 ........T...C................... AATATGAAGCTGGCCGATGGTGTACATACGTTT 60100 32 93.8 32 ........T...C................... TGTAAATGCTTTCTTTACGGAAACCGGGCAAG 60036 32 93.8 34 ........T...C................... CAACCATTTAAGGAGTATTCATGAGAAAACGTCT 59970 32 93.8 34 ........T...C................... TCGAACGTACGCGGGTTGAAGGTGGTAAAGGCCA 59904 32 93.8 34 ........T...C................... ATACTTGATAACAATCGCGCCCACAATCTTGGCG 59838 32 93.8 35 ............C...........A....... TTTTATAGTCCTGCACGACAGGGCGAGCAGGGCAA 59771 32 93.8 33 ............C.....G............. TAACTGCGTAGCCTCTGGATGCATAGCGTAAAA 59706 32 71.9 33 ....C...TTTTATA...G............. CTTAAAATGCTGGATAGCCTGTACGGTGACACG 59641 32 81.2 33 ....C....TTTAT.................. AACGAGTCGGTACGCTCCACTGCAATTCACAAA 59576 32 93.8 34 ........T...C................... AACTTGTGGATGGGCGTAGATTACGCTAACGACA 59510 32 71.9 33 ....C....TTTATA...GT............ AGAGGAGAACGCTTTTACCTCGTACCTCGGTTT 59445 32 75.0 34 ....C....TTTAT....G.....A....... TTGCTTGCTGTTCCTTGCCATCTACCCGGCAACG 59379 32 100.0 33 ................................ ATCTCATCGATCCGGTCACCCCGTCGTACTCCG 59314 32 90.6 36 .........T..C...........A....... TAAAGAAAGCGAATTCGCGTATCGTGTACCGCTTTG 59246 32 93.8 0 ............C.....G............. | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 94.1 34 GTCGTATCCCGCTGGGGTACGTGGGTTGAAAC # Left flank : TTAGATAATTATCCGGTCTTCTTAATGAAATAATTGTATGTATGTCCTTGTTACGTATGATGTTGAGACAATGACTTCCGACGGGCAGCGCAGGTTACGGCAGGTAGCACGCCAATGTCTGAACTATGGTCAACGCGTTCAGAACTCGGTCTTTGAGTGTTCTGTCTCGCCTGCTCAGTTTACCGAGTTAAGGTTAAAGTTATTGGATATTATAGATCATAAAAAAGATAGCATCCGCTTCTATTTCTTAGGGAATAATTATTCTAAAAGGGTTGAATATATAGGTGTCGTCACATCATATAATGTAGAAGACGAACTTATTATATAGCTATTCGCGAACATTAAGTATTAACGGGAAAGCAGGAACTTTCGCATTCATTGATTATTAATCTCTTGCACATATCTATTAGCCCTATTTCACCAATAAAGAATCTAAAAAGTTTATTATCGCATAAAGACATCACTAACAAGCTGTAAATGTTTGCATTATTTGCAATGCG # Right flank : TATTTGCGCAATGCAAATAGCAAGCTATGTATAGTCGTATCCGCCAGGGATACAAGCGATGCTCCATTATTCTGCCATCAAGGTTGATAGTATTCCATAAAAGTACAAGTTTTATGGAATACTATCAACCTTATTTCACCTATTAAAATTACAATTATATCATATTTCCATCAAACCAACAACAACTCCTCCACCCAAGCACCATCCAATACCAATCCTGCCTGCTCATCATAGCACCGACCATCCTCCAGAATGAAAATTCCGGCGTACTCTGCTACTGTTCCCTGTTTACGTAATTGCTCGAAATCCCACTTTCTGACAGATACACTATATTGCTGTAGTTTACGCAGTAACCAGAATTCCGGACCGTTTCTTTTCAGTTCCTCCAGTAAGGTTGCGCCATCGCCATAACCGACTAAAATAGATACAGAATCCTTATCGTCTATCAACCGGAATCGATCGGCAGCCGTAGCAAAAAAGAAATTCATTTCTGCGGCACC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCCCGCTGGGGTACGTGGGTTGAAAC # Alternate repeat : GTCGTATCTCGCCGGGGTACGTGGGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 69072-66864 **** Predicted by CRISPRDetect 2.4 *** >NZ_QREV01000020.1 Parabacteroides acidifaciens strain 426-9 Scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 69071 32 100.0 34 ................................ ATTAAAGGAGCTTCTATCCATGTAACGTCTGTAG 69005 32 100.0 35 ................................ ATTGAAATCATTATGTTCTGCAGGAGCGATTCAGA 68938 32 100.0 34 ................................ TATTTAATTCCAACTTCTTTGCCTGCTCATTTTC 68872 32 100.0 35 ................................ ATTCAAGAATTCTTCGTTCTGGAAAATATCGTAAC 68805 32 100.0 35 ................................ ATGATAAAATCGACCTCTATCATAATCAGTTGCAA 68738 32 100.0 33 ................................ ATATAAGTTATATGTTTGAAGATACAGCATTTT 68673 32 100.0 35 ................................ GAGGAGATCTGTCGAAATAAACTCTATGAAGTCTG 68606 32 100.0 35 ................................ TCTTTCTTTTTAATAGCTATATCACTATTCATCTT 68539 32 100.0 32 ................................ ATTTGGCTATTATGAATTTACATCCCTGTGTA 68475 32 100.0 33 ................................ TTATCGAATATTCGACAATTTAGAATTATTCCA 68410 32 100.0 34 ................................ TTGCCTCAGACAGCAGCCACGCGATCTGATAGTT 68344 32 100.0 34 ................................ CGCTCCGAACGTGACGCTCTTAACGATTATTTGA 68278 32 100.0 36 ................................ AGACTCAGGGACTGAAAGTATGCAACGAGATGGGGA 68210 32 100.0 32 ................................ TTACTACCCTGGGGCGCCGGCCTTCCATTTTC 68146 32 100.0 35 ................................ AATATGAAAATTGACTTTATATGAATAAGCGTGAC 68079 32 100.0 33 ................................ CCTTTGATGTGGTGTGCCTTACCATTTCTATCA 68014 32 100.0 35 ................................ GCATTATACTGTGTTGGTAAATAAATTGTCGTCAG 67947 32 100.0 35 ................................ AGGAAACACTATCACACCGAAATAAGCCGGTTGTT 67880 32 100.0 32 ................................ GCATTCGCCAGTCTGCAACGGAGATATTGGAA 67816 32 100.0 35 ................................ TATGATCATACGTTCGTGTGGACTACCGGTAATAA 67749 32 100.0 33 ................................ ATCTCGGCGTCACTGTCGGACGGGTACGGGTTA 67684 32 100.0 35 ................................ AGGTTATCGATGTTCGTCCCAAGCAACCGGATATT 67617 32 100.0 34 ................................ ACGTATGGACGAACTCAAAACCTCAGGAAAAAAG 67551 32 100.0 34 ................................ CAAATACTCAATATCTTGCAATGTTTGTAAGAGA 67485 32 100.0 33 ................................ AGTGAATACTCTTTCCATAAAGCCGTTATTTAA 67420 32 100.0 35 ................................ CGCAAAGGTATCGAGGTTTACGCCACCCAAATCAC 67353 32 100.0 33 ................................ TATGCTTATTCGGATGTGCTGTCGGAAGATGAA 67288 32 100.0 34 ................................ AGTTTCCCGGTACTCAAACGTAAGGCGGAAGGTA 67222 32 100.0 34 ................................ TCTATAACCATTGCAGCTGTAACGGAAACCTTAT 67156 32 100.0 33 ................................ CTCATAATAAGTAGCGATTGCCCTGTATTTATT 67091 32 100.0 35 ................................ TGTAAGGACGTATTGAGCGAAGTAAAAGAAACGGC 67024 32 100.0 33 ................................ ATCAACGTGGGCGGTGAATACTTGTGGATGGAC 66959 31 96.9 33 ................-............... AACACGATGATGAGCGACCCCAACTTTACGGTG 66895 32 87.5 0 .............C.......C..A..A.... | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGCATCCTTTATGGGTGCGTGGGTTGAAAC # Left flank : CGGCAAATCCCGTCTTCCCAAAGCCTGTGAAGTCATCCCACTCGTCCCCATACGCAGAAATCCGAACAGCCAGTAAATAATATTGAACAACATCCCCCCTACCGCAATCGCCCCTATATAAGAAGCCGCCCCCAGATGCCCGACAATCGCCACATCGACCAGCCCTAATAAGGGTACGGTTATATTGGAAACAATAGAAGGGAGCGCTAATTGAAGGATTTTTTTATTCATAATTATCGCATATACAATAAGCTTATTCTTAAATTTGTAGGCAAAGTTACAGAATACTTTCATAGATAACATGATTACGCAGCAATGTTTCAATCAAAGACAAGGCGCGAACCCTAAGTGGTTGTAAAAACGTTAGATGTTCGCATTCCCTACTAATCAGATATTTACGTATTTGCTTAGAGAAAATGAACATCTATTATTTTTCAACTCTATCATTCGCAAAATTATATGCTAAACGTGTCGTCAATAAAGCTTTTCATAAACATGGA # Right flank : CTGAACCCGCTGTACGAAGACATCAAGGCTTCGTAGTCGTATCCTTTATGAGTACATGAATCAAGTTATTTTTTCGATGCTGAGGAACCTCTGTGTTCGCAGTTGTGCCCATAAAGGATGCTACTATTTATAAATACAATTATTTATAATACTTTTTGCAAGAAGATTAAAGAACTAAAACGCTTGTTTGTTAGAAAATAAAATATAGCTTTGTAAAATATAGTCATAGAGAAACCGTAATTCTCAAAGGATGAACACCTATATTACTATTTATTAATCGTTAACCTAAACATATGGTATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCTGGAAATGAAAGTTGAAAGAGTTAGCTACGATGTAATAACGCCTTCTGCAGCCCGGGCTATTTTTGAATCTATATTTTGGAAACCTGCCATACGATGGAATATTACCCGGATAGAAGTACTAAATCCCATCAGATGGCTTTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTATGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //