Array 1 228220-227358 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMB01000023.1 Actinocatenispora rupis strain NBRC 107355 sequence23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================================================ ================== 228219 24 100.0 41 ........................ GCCACACCACCCGATCCGTACCACCCGGAAGGAGAACGCGA 228154 24 100.0 45 ........................ GTACCGCGAAGGAAACGTGGACGACGAACCCGGAAGGAGAAGCAC 228085 24 100.0 43 ........................ CCGCACCGCACCACCGTCGAACCGAAGTGGAAAGGAGAGCGAC 228018 24 95.8 44 ....................G... GCGACGGGAAACGGTTCCACGCCGCACGGAGAGGAGAACGCACG 227950 24 100.0 41 ........................ TGCACGCCACCCCGGTCCTACCGCCGGAAAGGAGAACGCAA 227885 24 100.0 45 ........................ GTATCGCGAAGGAAACGTGGACGACGAACCCGGAAGGAGAAGCAC 227816 24 100.0 45 ........................ CCGCACCGCACCACCATCGGACCGAAGCGGAAAGGAGAACGCGAC 227747 24 95.8 41 ....................G... GCGACGGGAAAACGGAAGGGCGCACGGAAAGGAGACGCACG 227682 24 100.0 45 ........................ GTACGCGACGGCAACCGTTCGGCGACGCACGGAGAGGAGCGCGGG 227613 24 95.8 43 ....................G... ACCGGAGTGTCCGGCGGTCGGAGCGCGAGAAGGGAGTACGCCG 227546 24 95.8 37 G....................... GTCGATGTTCGGCGCGTACGAGAAAGGAGGGTCGGCG 227485 24 95.8 80 ....................G... CCACCGACAGCGGCACACACGAAGCGGGAACACCCGCAGCAGGCGTTTTCCCGATACGCGGCCCGTACCGAGGGGGTGTC 227381 24 95.8 0 ........A............... | ========== ====== ====== ====== ======================== ================================================================================ ================== 13 24 98.1 46 ATGCGCGAGCACAACTGGTCCTGA # Left flank : TCGACCATCCGGGCGGCGCCGGTCTCGTCGACGTGGGTCAACTGGGTACTGCGCTGCGTCACGTGCCGAGCCTACTGAGCCACGCCGGTCGGCGGGCCCGCAGGGACGAACACGCTGCGCGTTCGCCAGCCGTACCGATGGGTGCGGGCCGTCGCCGTCCGCGAATGGCACAGCCGCCGGAGTAATGGGAACCGGTGATACCGGTGCGTACCCGGAAGAACATCGATGCGCGGGAGAATACGCACCCATCGCCAGATTGCCGGCGAGTTCTCCAATGGCCGCCGCATCGACGCCTCTCTATTCTGGCGATGTTCCTCCCACGCACGACGTCGACGCGCCGAGACGTCAGGTCCGGGCACGGCGCCCTGCGTGCATCTCGTTGGAGGCGCGGCTATGGCGGCAGCCGAGTACCACCGCGACCCGCGTACGGCGCCCGGGTTGTGGACGGTCACGGTGCGCGCGCCCGGCACTTACATTCCGCATTCGTCTGGGGGTCGCTC # Right flank : CGGCGCCGGCGGAGCGGTTCCGCAAGCCGGACGGAAAGTACCGGAGGTGCCCGGTGAACCATCGTGACCGGCACGTGTCCCGACGTCCCACCCGCGCGTATAGGATTGCGTCACCTGTCATGCGCTTCCCCTCCCCCGCGGACTGGTCACCGTGAGCACATCCAGTACCGAAGTGCCGAACCGCCGCCTGAGCCGCTACATCAGCGGGTACGGGGCAGTGGCGTTGAGCGTGCTGCTGATCGCCACCGCGAAGCTGCCCGGGCCGTCCCACCTCGCGTGGCAGGCGGCCGGACTGGTCGCGCTGTACGCCGTGGCCGGGCTGGCCAACCTGGAGATCCGCATCCGCAGCCAGGGCATCCAGTTCGCCTGGGGTGAGGCCGCGCTGATCATCGGGTTGGTGATGCTGCCGTCCAGCGAGGTCGTCTGGGCGGCGATGATCGGTCGCCTGATCGCCGAACTGATCGAGCGGCGCGCATTCTCCAAACTCGTACTCAATGTGG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCGCGAGCACAACTGGTCCTGA # Alternate repeat : ATGCGCGAGCACAACTGGTCGTGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 304969-305544 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMB01000004.1 Actinocatenispora rupis strain NBRC 107355 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 304969 29 100.0 32 ............................. CCAGACCGACGGTGAATTCCTTGCCGGAGGTC 305030 29 100.0 32 ............................. CGCCGGCCGCCGTCCTGGTGGCACGTGGGCGA 305091 29 100.0 32 ............................. ACTGGGAAGCGTTGGCACTGGGACGACCTGGC 305152 29 96.6 32 ............T................ CTCGCCACCGGTGGCCCGGTGGTCGGGCCGGG 305213 29 96.6 31 .....................A....... CTGGGCAACCCGGTCGCGCAGAACCGCCCGC 305273 29 100.0 32 ............................. GCATACACCGACCGGCTTTCGCCGACCGCGGA 305334 29 93.1 32 .C..........................T ACATTTCTCCGCTCGACAGATTGGGAGTACCG 305395 29 100.0 32 ............................. TTGTACGTCCGCGTCGGCACGGCGTGGAAGTC 305456 29 100.0 32 ............................. TGGTCCGCCGGCACCTGCATGCTCGCCACCAG 305517 28 86.2 0 .............T......-.C...C.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTGCTCTCCACACGCGTGGAGGTGGTTCG # Left flank : GTCGGCGGCCCAGGCGCGGCTGATCGGGTAGTAGTCCTTCCGCCAGGCGGTGCCGCCGGTGTAGGCGTCCATGTAGTTGAGGAAGCGCTTCTCGCCGGCTGCGCCGTCGTCCCAGATCGTGCCGGTCCGGTCGTAGGCGGCCATGAGCCCGGACGGGTCGCTGTGGATGACGGGGCTGTTGTTGGCGTAGGCGTAGCCGATGAGTTGCTGGGGGTCTGACGCGTCGAGCAGCGGGTCAGCGGACAGGAAGCGTCCGAGGCTGGGGTCGTACTCGCGGGCGCCGAGCAGGGTCAGGCCGGTGTTACCGTCCTGGATGCCGCCGACGTAGCCCCGGTCCCCGATCCACGACGGCAGTGTGGATCGGTTGTCGCCGAACGGATCGGTGTAGCGGTGGGTAGCGGTGAGCGTCTTGGCATCGACTTGGACGTTGTTGGTGCCGTTGGGGTCGTTGACCAGCCAGGTGGTTCGGGCTTCATGACCGCGCTGACGGAAGCCCCTGC # Right flank : GTTACCGTCGGCGCATGTCCAGCCCTGGAGACGTGGCGCCCGAGATCCTGGACCGGCTGCGGCCGATCTGCCGGCGGCTGCCCGAGGCGTACGAGGAACCGGCCTGGGTCGGTGTCCGGTGGCGCATCCGCACGCGGACCTTCGCCCACGTCTACGCGCCACGCCCGGAACGGCGTTCCGCGTACCCACGGCAGCCGATCGACGGCGAGGAACTGACCGTGATGACGTTCCGCGTCCCGGCCGACGACCTGCTCGGCCTGACCGCCAGCGGCTTCCCGTTCTTCCGCGCCGAGTGGGGCCGCAACGTTGTCGGCGCCGTCCTCGGTGACCACACCAACTGGACCGAAATCGCCGAACTGACCACTGACAGCTACTGCGAAATGGCCCCGAAGTACCTCGCCGCCCGGGCCGCCCGCTCCTCACCCCGTCACTGATCCACACCGCACCCCCACCGGCTCGCCGATCTGCGAGTCGCTCGCACATGCCAGACAGGCCGCGGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACGCGTGGAGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12871-11291 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMB01000005.1 Actinocatenispora rupis strain NBRC 107355 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 12870 37 100.0 36 ..................................... GGCAGGTGGGCCGGTGAGCAGCTGCGCGACGTGCAG 12797 37 100.0 35 ..................................... CAGCGTGATGCTGTAGATCGTGTAGAGCAGCCCAA 12725 37 100.0 37 ..................................... ACTCAGTAAGTGCTACTGGTTGCGCGCGAGGCGAATT 12651 37 100.0 37 ..................................... CGCGACAAGGTCCGTATCGCCGAGGAGGAGTCGAACG 12577 37 100.0 34 ..................................... ACGATCATCGTGCCGACCTCCGACGAGCACGGTG 12506 37 100.0 37 ..................................... CACGGCCACACGCTGATGACCCGTGAGGAGCGGCTGG 12432 37 100.0 34 ..................................... TCCAGCACGGTGCGGGCCACGAACCGGACCGGGG 12361 37 100.0 37 ..................................... TGCGACGCCGCGGTGCCGGTGTCGACATCCCACTGGA 12287 37 100.0 36 ..................................... CCGTCTCTGGTCGCCATGGCGGTCTGGGCCGTGCCC 12214 37 100.0 36 ..................................... CGCAATGGCACGCTGAATTTGCAGACCGGGGAGCTT 12141 37 97.3 36 T.................................... GAGTCGTACGCCACCGTGCATGTCCACGACGAGCGC 12068 37 100.0 38 ..................................... CCCGTGCGTCTGGCTACGGCCGGGCGTATCGGTAGCCG 11993 37 100.0 37 ..................................... AAACAGTTCGAGCAGTGGATCGCGGAGGGTACGGCCG 11919 37 100.0 36 ..................................... TGGCTTTCCGGGATCACACACCGGATCGCTCCCGGG 11846 37 100.0 36 ..................................... TGCGACGTACCCAAGCCTCAGCCCGGCGACCGGGTG 11773 37 100.0 36 ..................................... ATGTCGATCGCCACCCAGGCGATGGCCAGCACGGCG 11700 37 97.3 41 ....................C................ GACGTTGAGTTCAAGAACGCCATCAACAGTCAGCCGTGCAC 11622 37 94.6 37 ....................C...........C.... GGCACCTACAAGCCACCGAACACCGGAAAGTGAGAGG 11548 37 100.0 35 ..................................... TCCACCAGTTCGGCGTCGGGCAGGTAGCTGTCGCC 11476 37 97.3 36 ....................C................ TCGGCGCCGGTCGGCAGCAGCGACCGGTGTCTGCTG 11403 37 91.9 39 .............T.T....C................ AGGACGACCCGGCGCTGACGGCGGCGATGAGTCCCCGCG 11327 37 91.9 0 .............T.T....C................ | ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 98.6 37 CCAGCGCTGACCGCTCGCGGTCGGCGAGGATCGCAAC # Left flank : CCTCCACTGTGGACGGATCTACATGTGGGTGTGGAC # Right flank : AGCAGCTCGCCCTCCTTCTTTCAGGCGTCATGGCAGGGCAAACTATCTGACTACAAGTCAGATGCTCTAGGGCCGGACTGACCATGCGCCTCAGCCGGTCCACCTCTGTAGGGGAATTCAGGTGTCGACCGGCGTCACTGGGTCCACGTCCCCCGAGGCCTCTTGTTGTGGCTGCACGTGGCTTTGCGCCTGCATCATCCCCGGACTTATTGGCATATTTGTGCTGCCTTATCCATTTCCCATCTTGCTGCATGGTCAAGGCTGGGCCGCGGTTGCGTGCCGTGCTGGTGCATTTTGGCCGTCACGCAGTGGGGCGACGCTGTGATTGTGACTACATGGCGTGTCCAGTTGTATTCGTAACGCATCGTAAGTTTCGGGAGTTGTTGTGCGGTAGTTGCGTCCGGTTTGGTCAACCGGTTCTGTAAGGAACCTTCCCTGCTTGGTGATCTTGCGATAGTTTCCTGCGTCGCTGGCCGGGAGCTGTCTGGGTGCCTCCTGGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCTGACCGCTCGCGGTCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 883-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMB01000006.1 Actinocatenispora rupis strain NBRC 107355 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 882 37 100.0 35 ..................................... CCTCCTGGTGGCGTAGTCATTGTGACTAGCTCCGG 810 37 100.0 35 ..................................... TGGATCGAGGCCATGCCCGTACCGGCAATCTGCCT 738 37 100.0 41 ..................................... CCAGCGATGAGATCGCGCGCCGGTGGGGCGCCGACGTGCAG 660 37 100.0 35 ..................................... ACTGCGACGCCGACCAGCAGATCCGGGTTGTGCCC 588 37 100.0 35 ..................................... ACAGACGGGCAGCCCACAGACCGCAGTGCCGGGGC 516 37 100.0 36 ..................................... GTGTCGTGGTGTTACAAGCTGACCGCGTCCGATGTC 443 37 100.0 37 ..................................... GAGATCCCCGACGCCGTGCGTGCTCGTCTCCGGGCGC 369 37 100.0 42 ..................................... ACCGGGACCGGCAGTGTCCTGTTTGTTACGGCGGTCGCGGAC 290 37 100.0 39 ..................................... TGCGGGTCGAACACCCACACCGAGCCCGCGCGGCCACGG 214 37 100.0 34 ..................................... GTCGTACCCGTCGACATCATGTCCATGCCGCGGA 143 37 97.3 36 .......................C............. ACGATCCGCGTCAAGTCTCCGAACGGATGGCCGGGT 70 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 99.8 37 CCAGCGCTGACCGCTCGCGGTCGGCGAGGATCGCAAC # Left flank : AGCCCGGCTGCTGGCTCGGCACCTTCGCGACGATCTCGACTCTTACCGCCCCTGGACGGTGAACTGATGGATCTGGTCATCACCTACGACGTCAACACCACCACCCCCGAAGGGCAACGCCGCCTCCGCGACGTCGCGAAAATCTGCGAAGGATACGGCTACCGCGTCCAACAATCGGTGTTCGAAGTCGTCTGTCGCAACACCGACAAAGTCCGCCTCATCGCTGCGCTAGCTACCACCATCGACCCCGCCCACGACAGCGTCCGCATCTACCGACTGCCCACCAGCGCCCTCGACACCGTCGAACACCTCGGCAAACCCCGCCATCGAGCACCCCGAGACCCACTCATCCTCTAACCGTCGATTCAACCTCAGAACCCCAAGCTCGCCAGGGACACGCAGACGATCCCTAACCACGTAACTTGACAACTCGATACAAACAGACCATGGTCCTCAAGCTTCGTAGCATCTCTCTGGAGAGACTTCCCAGGTCACGAACC # Right flank : CGCCATCTGCGGGCCGGTAGCCCCGGTGCTGTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCTGACCGCTCGCGGTCGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //