Array 1 2232-854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDI010000002.1 Bacteroides pyogenes strain DSM 19673 Ga0373226_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 2231 36 100.0 30 .................................... ACAGTGGTGATCGCTACGAAGGCTCATACA 2165 36 100.0 30 .................................... GATATTTGCGTAGGATATGCAATGACGGGA 2099 36 100.0 30 .................................... TACCGTAAGATTTAGCCCTTTCAACCGCTT 2033 36 100.0 30 .................................... TAGGGTTCTTATTATGGAAATTCACAATAA 1967 36 100.0 30 .................................... TTGAAAGAGGAGTAGGAAGCTCCCCAAACT 1901 36 100.0 29 .................................... CACAACAAGCTCTTTGCCATCCGTCTCAA 1836 36 100.0 30 .................................... GGGCTATTCCATGCTTCGCATCCACCGAGT 1770 36 100.0 30 .................................... AGTACTTCGGTAGTTATCTCCGGGCAAACC 1704 36 100.0 30 .................................... TAGATCTCACCGTTCGCGACATCACCGCCC 1638 36 100.0 29 .................................... CATTAAAGAGTTTGCTGTCGGGTCTGATG 1573 36 100.0 30 .................................... ACGCTGATCCATAGACTGAACATAAACAAG 1507 36 100.0 30 .................................... GGGTGAAGTGTACTCGTTTCATCTTATTTT 1441 36 100.0 30 .................................... AAGAATAGCATTTTTAATATTTTCTCCAAA 1375 36 100.0 30 .................................... CATTCTTCAAGTGTTCGAGGGTAAGCAGGT 1309 36 100.0 30 .................................... GCCTCTACGATAGCCACGTCCTTGATTGCC 1243 36 100.0 30 .................................... TTGAAGAACTTGTCTACAACCTCATGGCGC 1177 36 100.0 29 .................................... GAAAACAGCGAACTACAATACTACAATAC 1112 36 100.0 30 .................................... TCAATCCTTTCGCTTCCCTGATAATATGTA 1046 36 100.0 30 .................................... ATCCGCGCGGAGAGACATCTGCGGGTTCTC 980 36 88.9 55 A.....................A..........TG. TATCGCTGACGAGTGTATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 889 36 80.6 0 .....A.......T.G.........A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 21 36 98.5 31 GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGATTGATGCCTTATTTTGCTAACCATGAAGCAACACAAGAGCAAGTGGAGATGGAATTGCGTCATTACGAAGATCATCGCAGGCGTGTATTTAATTGGGTCTTTGCTTTGGAAAAATCCGTATTGAAGAATGAAAAGTTGAGAAGGTTCTATGAAGAATCTCAGGGAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCATCACTCGTTTCGGAAGAAGAATATGAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCTGACTTGGAAATTGGGAAGCTGCCCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTT # Right flank : GTATATAGAGCCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATTCATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACTCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCGCACGAAGAAAAGAGAAACACTGCCATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAATGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAGATGCCGAACTTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCGAATAACTGTTTCCCTCCATCATGCGGAGAACTTCATGAGCGTGTAGTTGTTCCATAACGATTTATTAATTTGAATGATGTTATGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2097-1861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDI010000004.1 Bacteroides pyogenes strain DSM 19673 Ga0373226_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2096 36 97.2 30 ..............C..................... GGAACATCAAGCAGCAACTCGACGGAGTGG 2030 36 100.0 30 .................................... TATTCATTGTTGCGAAGTATATCGTAGTAT 1964 36 100.0 31 .................................... GCACGCAAGACGCAAATGCGAAGGGAACCAA 1897 35 88.9 0 C..............-...............C.T.. | CC [1867] ========== ====== ====== ====== ==================================== =============================== ================== 4 36 96.5 31 GTTTTATTCCGTCTTGATTTGCAAGCGGGCGACAGC # Left flank : ATCGAATCCATCTACACTGCCTATACCCTTTTCAACATCATCCGGTTGCTACCAATATATCCGTCATTGAACAGCTTTTGTCCGAGAACGTTCGCTTCCTTAACCAACAGTAGCTATCCGAAGTTCCAACAGCTGCTATTCAATATTCCCAAAGTCCTCTTTCAATGTTTCAGCAATCCCTCTTCGGTTTCCACAGAAATGCTCGTGGCTTCCGCAGGAACGCTCGTGGGGTTCCGCCAGTTCACAACGGAAATCAATACCGTCTTCACCTCGTTTCCACAGGAATACTCATAGAGTTCCGCAGGAACGCTCTTCAATATTCCCAAACTCCCCATTCTGTGTTTCAAAAGTTTCCCATTAGTGAAACAAAAGTTTCCCATTGGGGAAACTTTATTTTCCCAAGCGGGAAACTTTTGTTTCCCCAGTGGGAAACTCGACGGGCGCTATACATACAGCAACCTGTGCATAGCAGCTTAGTATGATTGGGCATACACGGCGGA # Right flank : GGCTAATGCGGTTTCCATTCAAGGGGGGGGCTCTTTTCTCCTTTCGGGGCGAAATAGCGAACGAAAACCCACGAACTTTCGGCGATATAAGAAATTTTAAAGACCAAATGCCGAATCATTCAAATAAAACATGTACTTTTGTCGTTCGTAAATTTGCAACCGATTGAAAGTTAAAACCATGAAGGCGAAAACTTCAATCTACAACAACAACAGAAAATGGATAAATTCAGTTATGCAATCGGGCTCGGTATCGGGCAGAACTTATTGAGCATGGGAGCCAAGGGCATCGAGGTAGACGACTTTGCACAGGCGATAAAAGACGTATTGGAGCACAACCCGACAGCAATCAGCCATCAGGAGGCCCGCGAAATAGTAAACAAATACTTCGAAGAATTGGAAACGAAGGTGAACGCCGCCAACATCGAACAAGGAAAGGCTTTTCTGGAAGAGAACAAGAAGAGGGCCGGCATCGTGACCCTGCCCAGCGGATTGCAGTACGA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTCCGTCTTGATTTGCAAGCGGGCGACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 141406-140284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIDI010000008.1 Bacteroides pyogenes strain DSM 19673 Ga0373226_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 141405 47 100.0 30 ............................................... TTTAACCTGACATATTCATTTTGGTGGGAG 141328 47 100.0 29 ............................................... AACAACGTCGTTTTCTTCTCCAATTCGTT 141252 47 100.0 30 ............................................... ACTTATACTCTGGTGAATTCTCTTTTTAAT 141175 47 100.0 30 ............................................... ATACAAAAAGAGAAGCAATAGAGTTTTTAA 141098 47 100.0 29 ............................................... GCTATCGCTCATGCCATTTACATTGAAGG 141022 47 100.0 30 ............................................... AAGGTTTCTATGTACCTGAGGAGCGAATAA 140945 47 100.0 29 ............................................... ATAGTCTGTAATCTGTTCGTAAGCTGAAT 140869 47 100.0 30 ............................................... TAATTTCTTCGGTAGTCTTTATCGTGTCAC 140792 47 100.0 30 ............................................... CGGACATGACGCGTACAGCCCGGGTCAATG 140715 47 100.0 30 ............................................... TATTTTTGTTGAAAATCTGAAAAAACGCTA 140638 47 100.0 30 ............................................... GTTCTTGAAAACGTTCTTCATCCTCCATTG 140561 47 100.0 30 ............................................... GGCGGACAATTCGGTCGTTTCCGCGTTTTC 140484 47 100.0 29 ............................................... CGGCGATAATGGAACTTCATGCAGAAGGT 140408 47 100.0 29 ............................................... TCGATCCATCTTTGTAATAAAAAATGAGT 140332 47 83.0 0 ..............................C.GCC.G....T...AA | T,G [140291,140293] ========== ====== ====== ====== =============================================== ============================== ================== 15 47 98.9 30 GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Left flank : GCATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTACCAACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGGAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGACATTGTGCCAGTAGTGAGAACGCAGCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAATAAAAAATCCCGTACTAACACGGGATTTTTTATTGTTAATGAGTAGGTTTTTCTTATTCTAATAGTCTTGTTAATTTGTTGATTATTAGTTCTCTACTCTGATTCA # Right flank : AAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCAGGCGTCATCTCCGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTAGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCTCTTTTCATCAACTTATGGAGTTTGTAGAGTGCAGCTTCGGGGGTGAAAGGGATGTCCGCTGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAAGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //