Array 1 97958-98323 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKD01000002.1 Campylobacter sp. P0088 .11822_4_50.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 97958 37 100.0 29 ..................................... CGGTTGCTGGTATAGCGATTATTGATAAA 98024 37 100.0 29 ..................................... GCTAAAACTTTCTCACACCACTTATTTTT 98090 37 100.0 29 ..................................... TGATGTTATTAAACAAGTTCAAGAGCAAG 98156 37 97.3 28 ....................................T AATCATAGCAGTAAAAGAGCGATTATTA 98221 37 100.0 29 ..................................... CTTCATTTAAATCTAAATGCATTAGAAGT 98287 37 94.6 0 ...................................TT | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 98.6 29 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGCA # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCCGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAACAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTACGAATGATTACAATCACCGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTAATATTTTGCCAGGATTAAACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGATCTGAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAGATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TTAAATTCAAAATTGGAACACAACTTGCTTAAGGACTAGCAAATTAACGCAGGAGCGATTATGCAAAATGGATATTATCAAGTAACTGGCGCAATGGTGACTCAGTTTAACCGCTTAGATATCATTACTAATAACTTAGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTGGTGATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAGGATGCTTTGCCTCTAGAAAATCACACTAAAGATTCAGCTAAATTTCTAAACCGCACATTAAATAGAGTGCCACATATCAATGAGGTTTATACTGATTTTGGCACTGGTGGGCTAAAGCATACTAATAATCCGCTAGATATATCACTTGGCAAAAATGATCTATTTTTATTAGTAGATAGTCCATCAGGTATAAGGCTGACTAAAAATGGCTCACTAAATTTAGATAGTGAAGGGTATTTAGTTACAAAAGAGGGTTATAGAGTACTGCCTAGCAACTATGCTGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2347-2889 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKD01000012.1 Campylobacter sp. P0088 .11822_4_50.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2347 35 91.9 35 A...-......-......................... GGCGTGGCGGTTAAAGATAAATATATTAGCAGTTG 2417 37 100.0 35 ..................................... TTGATGGGGAAGAGTGGAATTGGCGTGATGGCAAA 2489 37 100.0 37 ..................................... CTTGACCCCCCCGATCAACTCGAAAACGCTTACTTTT 2563 37 100.0 36 ..................................... TACCGAGAGCGTGTGGGAATATGTATTAAGAAAATG 2636 37 100.0 35 ..................................... GATAAAAGTTACAGCTCATCAAATCCAAGATGAAA 2708 37 100.0 35 ..................................... AATATTTACGCTGGGTTTGTGCATATTGATACAAG 2780 37 100.0 36 ..................................... CATTTAACATCCCTTTAATAGTATTTTGTATTCATA 2853 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.0 36 GTTTCAAACCGAGTTGATTTGTGGTATAATTTGCAAC # Left flank : GAAATGTGTAGCGGTCTAGACTTGATAGAGTGGATGATACGAATCTCACAAGGCGAGAGATTGCCAGAGCAAAAAGATATCAAATTAAGTGGCCATTCAATAGAGTGTAGAATCACAGCCGAAGACCCAAAAAGCTTCACCCCAAATCCAGGTAAAATCACAAAATATGTCGCCCCAGGCGGTAGAAATGTCAGAATGGATAGCCATGTCTATGAAGGTTATAGCGTTCCGCCGTATTATGATAGCATGATAGGCAAATTAATCGTCCATGATATAGATAGAAATAGAGCTATTGCCAAGATGAAAGTCGCACTTGATGAGCTAATCATACAAGGGATTAAAACAACCAAAGATTTTCATATAAATATGATGAATAATGATGATTTTATCAATAATTTATATGATACAAACTATTTAGCAAAGCATTAATTTAATTTTAATTCCAAGCTAAATTAATTTACAATAAATTTAATGGTGTCTAATTTATAAACTAGACACCT # Right flank : CCCTGAGCTAAATTTAGCCTATTTTATGGGCGTTTGGCTATAGTTTAAAGGTCTTAATTCTTCCACTTTGAAAAAAAATGCTAAAAATAGCGAATTTGTGGAAAAATTTAGCTATAATACAAACGCAAATTATACTATAGATTAACTCTTTAGCGTTTGAAATCACCTAAAGGTGTTAACAGATCGGGGCAACTGCCATATGGCACCCCCGGTATCATTCTCTATCATCACAGTAGTTTTTAAATTCACACTGCATACAAGCAGCTATACTAGCGCAACTTTGCGGAAATAACTCTTGATTTAACATTTTATTAATCTTATCTATCGTGCTATCAAATTGGGCTAAATCATCACTGTTTATATCAAATATCTTAAATTTAAGATTATTACTACAAATTAGCATTATCTTAAAAAATGGTTTATTAAAATGCTTACTAGCTAGCTTTGAGTAGGCTATAAGCTGCATTTTAGTGCCTTTATTTAGTATTGGCTTGTTTTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCGAGTTGATTTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //