Array 1 25994-24375 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZIR01000039.1 Streptococcus agalactiae BV3L5 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25993 36 100.0 30 .................................... TCCTAAAATTGCAACTAAACTTTATGGAAA 25927 36 100.0 30 .................................... TAATTGCCAATGCTTACAATATCTTCGTCA 25861 36 100.0 30 .................................... ATGTTCTGAATTACCTTTCTCGACACTCCG 25795 36 100.0 30 .................................... ACCATCAAGGCTCTTATCTGCAGATTGTTA 25729 36 100.0 30 .................................... AAATGGTTGCCAATGACTTTCTAGAGTGAT 25663 36 100.0 30 .................................... ACAAAATCTTTTGTTGCTCCTGGACGTATT 25597 36 100.0 30 .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 25531 36 100.0 30 .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 25465 36 100.0 30 .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 25399 36 100.0 30 .................................... CGCTCGATTGATGCTATCAACTATATTGAA 25333 36 100.0 30 .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 25267 36 100.0 30 .................................... AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 25201 36 100.0 30 .................................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 25135 36 100.0 30 .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 25069 36 100.0 30 .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 25003 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 24937 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 24871 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 24805 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 24739 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 24673 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 24607 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 24541 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 24476 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 24410 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGATAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //