Array 1 134303-134879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000017.1 Streptomyces sp. NRRL WC-3540 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134303 29 100.0 32 ............................. TGCGGGATCGGGATACTCTGTTTGGACACGAT 134364 29 100.0 32 ............................. CATCTACGAAGGCCGCGGATGGGACCGCCAGG 134425 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 134486 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 134547 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 134608 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 134670 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 134731 29 100.0 32 ............................. GGAATTGCCACTCGTATGCTCGTGGATTACGA 134792 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 134853 27 82.8 0 ........--.....A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGCGGTGCCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCTGGCCGATCCTGGCGACCCGGGGGGCGACGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGCACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAGGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139186-140374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000017.1 Streptomyces sp. NRRL WC-3540 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 139186 30 100.0 31 .............................. AGGGGTGGGGCGACGCAGCGTGACCCCCGCT 139247 30 100.0 31 .............................. CTCGGGCAGGGACGACACGTGCATAGCGATG 139308 30 100.0 31 .............................. GGTACATCACCGTCACCGCGGCCGGCCTCTG 139369 30 96.7 31 .............................G TCTGGCTGATCTCCCCGGTCATGTCGCCGTT 139430 30 100.0 31 .............................. GGATCCGCACCAGCATCACCGTGCAGATCCA 139491 30 96.7 31 .............................G CGGCGGGTACCGGACGGCGGCGGCGGAGGAG 139552 30 100.0 31 .............................. CGAGCAGCCCGTATGCCCCGTGGGTGCGGCG 139613 30 93.3 31 ............................AG ACTCGGCCGTTGCGAAAGCCGGAAAGTAAAT 139674 30 96.7 31 .............................G GCCTACACAGCTACATGGCGGGTCACGAGGA 139735 30 96.7 31 .............................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 139796 30 93.3 31 ...........G.................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 139857 30 96.7 31 ...........G.................. AGCTGGCCCGGCCGGCACGAGCCGATGGTTG 139918 30 93.3 32 .T.........G.................. CTTGCTCCAGCTCACCACCGCAGACGACTTCG 139980 30 90.0 31 .T.........G................A. CCCGGACCCGGAGGTGGCGCCCGTCCCGTAG 140041 30 90.0 31 .T.........G.................T GAATGGACACTGCCTACACACCCCCGGCGCG 140102 30 86.7 31 .T......T..G.................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 140163 30 90.0 31 .T.........G.................G TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 140224 30 83.3 31 .T.........G.......A........TG ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 140285 30 86.7 31 .T.........G......A..........G CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 140346 29 86.7 0 .T.........G.............-...A | ========== ====== ====== ====== ============================== ================================ ================== 20 30 93.8 31 GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCACGCACGCCCGACACAACAGATCACGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 143659-144616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000017.1 Streptomyces sp. NRRL WC-3540 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 143659 30 93.3 31 .......T.....................G ATGCGTTGCTCGGTGACGACGCGGTTCGTCG 143720 30 93.3 32 .......T.....................G ACCCCGACGACACCCTCACCAACCAGAGAGAC 143782 30 96.7 31 .............................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 143843 30 100.0 31 .............................. GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 143904 30 96.7 31 .........................C.... CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 143965 30 96.7 31 .............................T GCGACACGGGGCTCCCGGCCGCCGACCCGGA 144026 30 100.0 31 .............................. AGCGGGCGCACTTCGAGCAGCGCCAGGCCGA 144087 30 93.3 31 ...............C.............T ACGACGTGCCCGGCGATGACCTCCCGGACTA 144148 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 144209 30 90.0 42 ..........................G.GG GGGTGGTCCCACCGGGATGATCATCCCGAGGATTTCCGGGAG 144281 30 96.7 31 .............................G GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 144342 30 96.7 31 .............................G GGTCGAGCGGGACCGCCAGCTCACGGCGATG 144403 30 100.0 31 .............................. ACTTCATGACCTCGCGGACGGTGGCGCCCTC 144464 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 144525 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGACGGT 144586 30 80.0 0 ...........C.GT...C..C.......A | G [144599] ========== ====== ====== ====== ============================== ========================================== ================== 16 30 94.6 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGCGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGTGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACATACTCCACCGCC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7875-8281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000062.1 Streptomyces sp. NRRL WC-3540 contig62.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 7875 30 93.3 31 ............................CG TCACCCGGCCGGGAAGCGCGGTGATGAACCT 7936 30 100.0 31 .............................. CGGGGATGCCGTATACGGATATCTCGCGGGC 7997 30 93.3 31 ............................CA CCTGCTGGATGCGGGCCCGCAGCTCGGGCAC 8058 30 96.7 31 ............................C. CGGCGACGGTGCGCCCATGGTGGTTGGTCAC 8119 30 90.0 42 ................T...........CG GGTTCGCCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 8191 30 100.0 31 .............................. CTCCGTGGCAACCTGACCCCACTCACGGCCT 8252 30 86.7 0 ...........T...A.........C..C. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 94.3 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Left flank : CACCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACAAAGCCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGAGCCAACCGCACCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCTGCCCCAAGAACCCCCGTTAGGCAGGACGGACACACCGCATCCCCAGCACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACAGAAGGCGATATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4543-4816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000077.1 Streptomyces sp. NRRL WC-3540 contig77.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4543 30 100.0 31 .............................. CCGCGCGCCTGCATCCGAAGACGGCTGAGCG 4604 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 4665 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 4726 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 4787 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGCCCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACGTGTGACCACCTTGCCCCGGAGAGCGAGATATGCAGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAAACCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCACGGGGGCGAAGGTCCCTCTCGTGGAAGTCCGTGGAGGCCGGGTCGGATCGTGCGAAGTCCCGCCCGCACGCGCACAGGGGCGTGGCACGCGGACGGGCCCGAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8204-8355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCW01000077.1 Streptomyces sp. NRRL WC-3540 contig77.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8204 30 96.7 31 .............................G ACACCGAGCTACGCAAGAGCATCACGACGCA 8265 30 100.0 31 .............................. ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 8326 30 93.3 0 .CA........................... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AAGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCACCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGTCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTAACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //