Array 1 10072-8963 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJT01000033.1 Pseudomonas aeruginosa strain Pae_CF67.12h CF67.12h_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10071 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 10011 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 9951 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 9891 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 9831 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 9771 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 9711 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 9651 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 9591 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 9531 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 9471 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 9411 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 9351 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 9291 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 9231 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 9171 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 9111 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 9051 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 8990 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1413-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEJT01000069.1 Pseudomonas aeruginosa strain Pae_CF67.12h CF67.12h_contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1412 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 1352 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 1292 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 1232 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 1172 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 1112 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 1052 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 992 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 932 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 872 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 812 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 751 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 691 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 631 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 571 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 511 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 451 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 391 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 331 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 271 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 211 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 151 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 91 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //