Array 1 74041-75289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJQ010000005.1 Salmonella enterica strain SC-Z1910-0001 NODE_5_length_333743_cov_140.354738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74041 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 74102 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 74163 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 74224 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 74285 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 74346 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74407 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74468 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74529 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74590 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 74651 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 74712 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 74773 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 74835 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 74896 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 74957 29 100.0 32 ............................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 75018 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 75079 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 75140 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 75201 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 75262 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91422-92471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJQ010000005.1 Salmonella enterica strain SC-Z1910-0001 NODE_5_length_333743_cov_140.354738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 91422 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 91483 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 91545 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 91606 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 91667 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 91728 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 91789 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 91851 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 91912 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [91954] 91954 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 92015 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 92076 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 92137 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 92198 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 92259 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 92320 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 92381 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 92442 29 96.6 0 A............................ | A [92468] ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //