Array 1 303877-303434 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACZEM010000004.1 Bifidobacterium breve strain PRL2020 Contig_4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    303876	    33	 100.0	    34	.................................	ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT  	
    303809	    33	 100.0	    36	.................................	ACCTCAGTAGACGTAGCCGTTGCGGCGGGCGCGCGC	
    303740	    33	 100.0	    36	.................................	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC	
    303671	    33	  97.0	    35	....A............................	TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 	
    303603	    33	  97.0	    35	............T....................	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 	
    303535	    33	  97.0	    36	............T....................	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC	
    303466	    33	  84.8	     0	.............T...........G..CCT..	|                                   	
==========	======	======	======	=================================	====================================	==================
         7	    33	  96.5	    36	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                    	       

# Left flank :   GGCGCTGATGCGCGTCGACTGGAAGAGCGTGGGCCCGATCTGCAGACGCGTCCCTCTCGGGCATCGAGGAGTTCTCGAGGCTCGGCGAGAAGATCGACCGCCGCCGCTTCGACATCCTGCGCACCATCCGGTCCGGACTATCCAACGCTCGCCTGGAGGCCGTCAGCAACAAGATCAAGACCACCATCAAGATGGGCTACGGCTACAGGAACCTCGGCAACCTCATCGCTCTGGTCATGCTCAAATGCGGCGGCCTCAACCTCCAACTCCCCGGACGCCAATAACCCGTAAGCCAGACCAGGGACCCACACCCACACAAACACCCGAAGAGCCATTTTTTTCGTATGCACTCCGTGATGCCAGCTGTGCTATTTAGGATGCCCGGAAAGACGCCAATCTTGACTTTGTCGAACAATGCACATCGACACGCCGATCGAACATGGTTTTTACTAGTGACGAAACACGAAACACCGACTTGACTAAAAACATCCGAAACCCGA
# Right flank :  GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC

# Questionable array : NO	 Score: 8.93
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-8.40,-8.50] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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