Array 1 3016220-3014682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067397.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3016219 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3016158 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3016097 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3016036 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3015975 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3015913 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3015852 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3015791 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3015730 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3015669 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3015608 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3015547 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3015486 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3015425 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3015364 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3015303 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3015242 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3015180 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3015077 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3015016 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3014955 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3014894 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3014833 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3014772 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3014711 29 96.6 0 A............................ | A [3014684] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3034333-3032352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067397.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3034332 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3034271 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3034210 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3034149 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3034088 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3034027 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3033966 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3033905 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3033844 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3033783 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3033722 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3033661 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3033600 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3033539 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3033478 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3033417 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3033356 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3033295 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3033234 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3033173 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3033112 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3033051 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3032990 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3032929 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3032867 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3032806 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3032745 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3032684 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3032623 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3032562 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3032501 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3032440 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3032379 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //