Array 1 3561854-3558955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065564.1 Salmonella enterica subsp. enterica serovar Albany strain R15.2267 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3561853 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 3561792 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 3561731 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 3561670 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 3561609 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 3561548 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 3561487 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 3561426 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 3561365 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 3561304 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 3561243 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 3561182 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 3561121 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 3561060 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 3560999 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 3560938 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 3560877 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 3560816 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 3560755 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 3560694 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 3560633 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 3560572 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 3560511 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 3560450 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 3560389 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 3560328 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 3560267 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 3560206 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 3560145 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 3560084 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 3560023 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 3559962 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 3559901 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 3559839 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 3559778 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 3559717 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 3559656 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 3559595 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 3559534 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 3559473 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 3559412 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 3559350 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 3559289 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 3559228 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 3559167 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 3559106 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3559045 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3558984 29 100.0 0 ............................. | A [3558957] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3580391-3578411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065564.1 Salmonella enterica subsp. enterica serovar Albany strain R15.2267 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3580390 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 3580329 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 3580268 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 3580207 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 3580146 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 3580085 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 3580024 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 3579963 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 3579902 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 3579841 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 3579780 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 3579719 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 3579658 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 3579597 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 3579536 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 3579475 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 3579414 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 3579353 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 3579292 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 3579231 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 3579170 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 3579109 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 3579048 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 3578987 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 3578926 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 3578865 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 3578804 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 3578743 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 3578682 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 3578621 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 3578560 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 3578499 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 3578438 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //