Array 1 7636-4734 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOML01000122.1 Serratia marcescens strain KCJ3K435 NODE_122_length_16297_cov_8.345578, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7635 28 100.0 32 ............................ TGTGGGCTTGTCAGACTGGTCCCCATCGAGCT 7575 28 100.0 32 ............................ ATACGCCACAGCGACGATATTGAATGCGAAAC 7515 28 100.0 32 ............................ GATCGGCCGACGCTTTTTAGCACCAGCGCGAG 7455 28 100.0 32 ............................ CGTTTGACAGGATGGCCGCTCGGATGGATCGC 7395 28 100.0 32 ............................ AGGCTGAAAAGAAGTTACCCAAGCCGTATTTT 7335 28 100.0 32 ............................ AAACAGAAATTGAATTGGTTGTAACTACTATC 7275 28 100.0 32 ............................ ACATTGCCGACGTGATCGATTATCAGCGCGAA 7215 28 100.0 32 ............................ TTGCCCAGAAAGACTTTTTTCAATGACCCGGC 7155 28 100.0 32 ............................ ACTTGTGTATCAGCGGCGATATGGGCACATAC 7095 28 100.0 32 ............................ ATCGTCAAATATCCTTGGGTATTGCATTTTAT 7035 28 100.0 32 ............................ ATTGCCAGTTTTAATCGTTCTGAAAGGGTATC 6975 28 100.0 32 ............................ GTTTGCAGACGGTAGCTTCCCTGTTGTCGTGT 6915 28 100.0 32 ............................ TCAGCTTGAGCATCCTCTTGGCTGATATCGTT 6855 28 100.0 32 ............................ CTGGCGTTATCGGCCTTAAACATCGGAGTGAA 6795 28 100.0 32 ............................ TCAGGCACTGCTGGCGCTGGCGGGGCGGTGAG 6735 28 100.0 32 ............................ TATATCGTGCGGCCACTGGCATCGGCGGTGAA 6675 28 100.0 32 ............................ AGATTGACCCACACAGCATTTGACGTCATGTT 6615 28 100.0 32 ............................ TGTACACGCAGGATGAAGTTAGGGAGTGGTAC 6555 28 100.0 32 ............................ GTACTGGGGCGGCTTCGCGGGTTCCGACACCA 6495 28 100.0 32 ............................ GGCAGCGCGCCGGAGGACTGGACGATAGCCAG 6435 28 100.0 32 ............................ TCTGGATGGCTCGATATCTTTCCGCAAATCAC 6375 28 100.0 32 ............................ CTCGGCGTCATCCATGCGTTGCCAAACTTTCT 6315 28 100.0 32 ............................ AGCGGCACGACAGACAGCTGCGAGGACGACGA 6255 28 100.0 32 ............................ GGCAAAACCAATTGTAAGCTTTGATGCTATAC 6195 28 100.0 32 ............................ TGTCCTTCATCTCTGAGCAACGCTGTAACGGC 6135 28 100.0 32 ............................ GCTCGAAAGCACATTGAAGCGATCGGGGTTGT 6075 28 100.0 32 ............................ TTCCAGAATAGCGCCTTTGGATCGCCCGCCGA 6015 28 100.0 32 ............................ TTGAACGGTGATCGTTGCTGTCCCTTCCCCTG 5955 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 5895 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 5835 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 5775 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 5715 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 5655 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 5595 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 5535 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 5475 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 5415 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 5355 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 5295 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 5235 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 5175 28 96.4 32 .......................G.... AGGGGGGATTATCTCAAGAAGGCGCAGACCGC 5115 28 96.4 32 A........................... AGCTGGTGCAGCGCACTGCGTAGCCCTGCAAT 5055 23 82.1 32 ................-----....... ATCCCTTTGGCCGTGGTGCTGGCGTCGGGGTG 5000 28 100.0 32 ............................ TGGGTAGATAGCTTTCCCAGCCGGTGAATCCG 4940 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 4880 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 4820 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 4760 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 49 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGATAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7899-9670 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOML01000184.1 Serratia marcescens strain KCJ3K435 NODE_184_length_9684_cov_7.518573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7899 28 100.0 32 ............................ ATCCCTGCTCAGCGCCAGGCTGAGAATATCGA 7959 28 100.0 32 ............................ AATAACGCCACGCAGGAAACCAAGGAAAAGGG 8019 28 100.0 32 ............................ TCATTTATCCCATCCTGAACAATACCGGTGCC 8079 28 100.0 32 ............................ GTTGGCGCAACCGTCGATAAAGTCAGCGTCAC 8139 28 100.0 32 ............................ TGCTTCGGGAACAGGATAAACGGCACCGTTAC 8199 28 100.0 32 ............................ TCTACCCCTCGATCACCGCCTCTAAAAATTAG 8259 28 100.0 32 ............................ AATTTTATTTTAGGCCGTAGCACCTCGGGAAC 8319 28 100.0 32 ............................ TTTCCCCCCTCTTACCCTTCCCCTCTCCCCCG 8379 28 100.0 32 ............................ GCCAGCTGCGTCACTTTCGGCGCCAATGATCC 8439 28 100.0 32 ............................ AGCTGGCGATCTGCCTCGGGATTAATCGAGGC 8499 28 100.0 32 ............................ TGGCGAGGAACGCTAAAGACGCCCCGGCTTAT 8559 28 100.0 32 ............................ TGTTTATTGATGGGGTGTACCAGACCGACAGC 8619 28 100.0 32 ............................ AGATCGCCGGGGCCGCTCTCAGCGCTGCCGAC 8679 28 100.0 33 ............................ CGATCCGCCGAACATCCCCCTCAACCTGGATAC 8740 28 100.0 32 ............................ AGGAGGCGCTACTGAGCGATCGGGAAGAACTG 8800 28 100.0 32 ............................ TGGATACTGGCTATCACGTCAATACAGTTCAA 8860 28 100.0 32 ............................ GAGCCAGCTGCAGATTGCATCCAGATAAATGC 8920 28 100.0 32 ............................ TGCAGCAGTTCGGGGCTGGCGGTGCCGTCGCC 8980 28 100.0 32 ............................ GGCAAGGCAAACGAGTTTCGCAACGTGCAATT 9040 28 100.0 32 ............................ GTAGTTATCCATCACACAAAGCTGAGTACTTC 9100 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 9160 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 9220 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 9280 28 100.0 32 ............................ ATAAAGTAGTGGTCGTTAAAGTAGAAAGCCTT 9340 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 9400 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 9460 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 9520 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 9580 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 9640 28 96.4 0 ....................A....... | A,A,G [9660,9663,9666] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACTCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //